Miscanthus floridulus: 136467826
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Entry
136467826 CDS
T10264
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
mflo Miscanthus floridulus
Pathway
mflo03030
DNA replication
mflo03420
Nucleotide excision repair
mflo03430
Mismatch repair
mflo03440
Homologous recombination
mflo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136467826
03420 Nucleotide excision repair
136467826
03430 Mismatch repair
136467826
03440 Homologous recombination
136467826
03460 Fanconi anemia pathway
136467826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mflo03000
]
136467826
03032 DNA replication proteins [BR:
mflo03032
]
136467826
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136467826
Transcription factors [BR:
mflo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136467826
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136467826
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136467826
MMR (mismatch excision repair)
136467826
DSBR (double strand breaks repair)
HR (homologous recombination)
136467826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
136467826
NCBI-ProteinID:
XP_066322712
LinkDB
All DBs
Position
7:123286268..123289911
Genome browser
AA seq
649 aa
AA seq
DB search
MARAKLTPNAVAAAMAGDTNLKPVVQVVDLRSIAVTGGSRLRFRAIISDGVATGHALFAS
QLFDLARSGVVRRGSVVQLLDYIVNDVGSNWNRKAIVILNMEVLAAECEIIGNPALPPDS
GDSNSMREDQFNGAPQNGSMAGSALNKVARPSDNAQVIQRSMAGNSLNMVPRPSDVFQPT
VQPSYRPAPKYRNHGTIMKNDAPARITPISTLNPYQGRWAIKGRVAAKGEIRRYHNAKGD
GKVFSFDLLDSDGGEIRATCFNTLVDRFYEVVEVGKVYVVSRGNLKPARKDYNHLNNEWE
IFLEFQSTIELCLDENSSIPAQRFSFSSIDKIEDSENNAIVDVIGVVTSVNPSTTIQRKN
GMEAQKRTITLKDMSGRSVELTMWGDFCNREGLQLQEMVECGAFPVLAVKAGKVNDYSGK
SVGTISSSQLLINPDLAEAHSLRQWFDCGGRDASTQSISRDFTPSASRNEIRKTIAQIKD
DGLGMGDKPDWVTVKAAVTFIKTDPFCYTACPNVVGDRQCGKKVTKSDSGNWLCDKCNQE
FPECDYRYLLQLNIQDHTGTTSATAFQEAGQELLGCSARELNMFKENEDPRYTAVLIHCL
YQNYLLRLKVKEEQYGDERRVKNTVAKVERVDPLAESKFLLDSISRFIV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgagggcgaagctgaccccgaacgccgtggcggcggcgatggcgggagacaccaac
ctcaagccggtggtgcaggtcgtcgacctccggagcatcgcggtcactgggggctccagg
ctcaggttccgcgccatcatctccgatggcgtcgccacggggcacgcgctcttcgcctcg
cagctcttcgacctcgcgcgctccggcgtcgtccgccgcggctcggtcgtgcagcttctc
gactacatcgtcaacgacgtcggctccaactggaacagaaaggctattgttattctgaac
atggaggttcttgctgcagagtgtgagattattggaaatccagcactacctcctgattct
ggagattctaattccatgagagaagaccagtttaatggagcacctcaaaatggttcaatg
gcagggagtgctttgaacaaagtggcaaggccctctgacaatgctcaagtaatccagaga
tcgatggcagggaactctttgaacatggtccctaggccaagtgacgtcttccaaccaaca
gtacagccatcctatcgccctgcacccaagtacagaaaccatggcacaatcatgaaaaac
gatgctcctgctagaataacccccatatctactctaaatccttatcagggccgctgggct
atcaagggtcgagtagctgccaaaggagagatccgccggtaccataatgcaaaaggtgat
ggcaaagtgttctcttttgacctgcttgattctgatggtggtgagattcgggctacatgt
ttcaatactcttgttgatcgcttctatgaagttgtggaagttggtaaggtctatgtggta
tctagaggaaacttgaaacccgcaaggaaggactacaaccatctgaataatgagtgggag
attttcttggaatttcagtcgactattgaactttgtcttgatgagaacagttctattcct
gcccagcggtttagcttctcttctattgataaaattgaagattcagagaacaatgctatt
gttgatgtcattggtgttgttacatctgtcaaccctagtactacaatacagaggaaaaat
ggtatggaagctcagaaaaggaccatcaccctgaaggatatgtctggtcgaagtgttgag
cttaccatgtggggtgacttctgcaacagagaaggcttgcagctgcaagaaatggttgaa
tgcggggcgtttcctgtactggctgtcaaagctggaaaagtcaatgattacagtgggaag
tctgttggcacaatttcttcatctcaactcctcataaaccctgatcttgctgaggctcat
tctctcaggcagtggtttgattgtggaggaagagatgcttctactcagtccatatccagg
gattttactccttcagcatcaaggaatgagatccgaaagacaatagcacagataaaggat
gatggtcttggaatgggggacaaacccgattgggtcacggtgaaggctgctgttacattc
atcaaaaccgaccccttctgctacacagcttgccccaatgtggttggagacaggcaatgt
ggtaaaaaggtgacaaagtctgattcaggcaactggctatgtgacaagtgcaatcaagag
tttccagagtgtgattacaggtatctcctgcagttgaacattcaagatcacacgggaaca
acttctgcgacagcatttcaagaggctggacaggagctacttggttgctcagcacgagag
ctcaacatgtttaaagagaacgaagatcctcgctacacagctgtcttgatccattgcttg
tatcagaattatttgttgaggctaaaagtgaaggaagaacaatacggcgacgagcgacga
gtgaagaacactgtggccaaggtggagagggtggatcctttggctgagagtaaatttctg
cttgattccatttcaaggtttatagtatga
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