KEGG   Miscanthus floridulus: 136472101
Entry
136472101         CDS       T10264                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like isoform X1
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136472101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mflo03021]
    136472101
Enzymes [BR:mflo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     136472101
Transcription machinery [BR:mflo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     136472101
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 136472101
NCBI-ProteinID: XP_066325923
LinkDB
Position
8:54703096..54711169
AA seq 1284 aa
MMTLLLFPCSIVKAGILLTPSATACCLAMGEPQMDGDQSPVVSDTDMMDCLNLDGYGDVE
DPHKEGAKGERQPSGKVDELQSTMDLDLTCITSVEDEGHEKQNAMDVDLKEILPEEDEGK
GKASSDLPSHVPVDFDVASLEKFCKEASRSFFSETGLVSHQINSYNHFVSHGLQELFDSF
GEITVEPDYDPSNKDGAWKHATVKFGRVKLGEPVFMVDNSDLEQQDLKFKPRHARLQKMT
YASRMNVEMTVQVYILDKSDKAKTGKDTHVHRRDVMTETKQVSMGLLPVMVKSNLCWLHK
LQESDCQFDFGGYFVIKGTEKVFIAEEQRFLSRIWVTDRPSWNASYTSQIRREKIDIKLV
PSKRNEICKVINIYFMGTIMPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKE
SHEEFEGFRTPGRACQYVDELIRKSKFPPKESFDQYVCRYMFPSVNGFRSKALFLGYMVK
CLLMAYSGNRKCDNKDDFRNKRLDLACQLLRRELWTHIKRSERRMVKLMQRDLSNDGSLQ
DLRRYVDASIITNGLNRAFSTGSWQHPFKKERCSGVVATLRRTNPLQMMSDLRKTRQWFA
YSGTVGDARYPNPSYWGKLCFLSTTDGEKCGFVKNLAVTAVVSSVVRKPLIDTFVSCGMK
KLNDISLQDISGKFRIFLNGDLLGVCADPHELTSRLRSLRRSKLIDPQVEIKMDKHHKEV
RVFSDPGRILRPLLVVENLRRITRPKDGLYSFQELMDQNIVELIGVEEEEDIQCASGIRH
LFAGEKEDGSSGYTHCELDPSFLLGLSCSLIPFANHDNARRVLMQAQKISQQAIGYSPTN
SHTRLDTLSHQIFYPQRPLFKTVVSYGLGKAETAYSFGQKDDFNTPEYFNGQNAIVSVNV
HQGFNQEDSLVLNRASLERGMFRTLHFKSYKAQVENKEITRRLKHRESINFGKVQSKRGK
VDSLECEGLPYVGASLQSGDIVIGKVSESGEDHSAKLMHTEQGMVDKVVLSANDDGVNFA
TVTLRQSRSPCVGDKFASMHGQKGVIGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPG
QLLEAALGKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTGERMKSL
VFMGPTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAA
ANLHERLFTLSDFSQMHICQACERVATVIMRPAEGGSKKVRGPYCMFCRSAERIVRVNVP
YGSKLLYQELFSMGICLKFDTEVR
NT seq 3855 nt   +upstreamnt  +downstreamnt
atgatgactttgctgttgtttccatgttctattgtaaaggcagggattttgttgacaccg
agtgccactgcctgttgtttagcaatgggggaaccacaaatggatggtgatcagtcacct
gttgtctcagatactgatatgatggattgcctgaatttggatggctatggagatgttgaa
gatccccacaaggagggtgcaaaaggggagcggcagccttctggcaaagttgatgaactg
cagtctactatggatttggatttgacatgtataacatctgtggaagatgaagggcatgaa
aagcagaatgctatggatgtggatttgaaagaaatactgcctgaggaagatgaagggaaa
ggaaaggcttcttcagatctaccctcacatgtaccagttgatttcgatgttgcaagcctc
gagaagttttgcaaagaagcatcaagatcatttttcagtgaaactggactggttagccat
cagataaactcatacaatcattttgtctcccatggactccaagagctctttgattctttt
ggggaaatcactgtggagcctgattatgacccttcaaataaagatggtgcttggaaacat
gcaactgttaaatttggcagggttaagcttggtgagccagtgtttatggttgacaactct
gatcttgaacagcaagatctcaaatttaagcctagacatgctcgcctccagaagatgaca
tatgcgtccaggatgaatgtagaaatgactgttcaggtttatatactcgacaaaagtgac
aaagccaaaactggtaaggatacacatgttcatagaagagatgtaatgacagaaactaaa
caagtcagcatgggattgttacctgtgatggtgaagtcaaatttgtgctggctgcataaa
cttcaagaaagtgattgccagtttgattttggtggctactttgtgatcaaaggaacagaa
aaggtattcattgctgaagagcaaaggtttttatcaaggatttgggtcacagaccgccct
agctggaatgcaagttacacgtctcaaatcagacgagaaaagatcgatataaaacttgtt
ccgtccaaacgcaatgaaatctgcaaagtcataaacatttacttcatgggtacgattatg
ccaatttgggtagtattttttgcacttggtgtatcgtcagacaaggaagcttttgatatg
attgatatcctagactgtgatgcttccatagtcaacataatatcatcaactattaaagaa
tctcatgaagaatttgaaggcttccgcactccaggtagagcctgtcaatatgttgatgag
ctgatcagaaaatcaaagtttccacccaaagaatcctttgatcagtatgtttgtaggtat
atgtttcctagtgtcaatgggttcaggagcaaggcacttttcttgggttacatggtcaaa
tgcctgctaatggcatactctggcaatcgaaaatgtgataataaggatgatttccgtaac
aagaggctagatcttgcctgccaattgcttcggagagaactctggactcatattaagaga
tcagaaagacgcatggttaagctcatgcagagagatttgagcaacgatggcagcttgcaa
gaccttaggcgttatgtggatgcatcaattattaccaatggattgaaccgagccttctcc
actggttcttggcagcatccttttaaaaaagaaaggtgttcaggggttgtagcaaccctt
cggagaacaaatccacttcaaatgatgtctgatctgaggaagacgcgacagtggtttgcg
tattctggaacagttggagatgcaagatacccgaatccatcctactggggaaaattatgt
tttttgtccaccactgatggtgaaaaatgtggatttgtgaaaaaccttgctgtgactgct
gtggttagctctgtagtgaggaaaccattgattgatacatttgtttcttgtggaatgaag
aaactgaatgatatttctctgcaagatatttctgggaaattcaggatcttcttgaatgga
gacttgctcggagtatgtgcagacccacacgaattgacttcgcgtttaagaagcttgagg
cgtagcaagctaattgatcctcaggttgaaatcaaaatggacaagcaccataaagaagtt
cgtgtattttctgatccaggcagaattctaagaccacttcttgtagttgaaaatctgaga
agaatcacaagaccaaaagatggactatactcttttcaggaacttatggatcaaaacata
gttgagttgattggtgttgaagaagaggaggacatccaatgtgcatctggaattagacat
ctattcgcaggggagaaagaagacgggtcttctggctatactcattgtgaacttgatcct
tctttcttgctagggttgagttgcagtctcattccctttgccaaccatgataacgctagg
agggttctgatgcaagctcaaaagatatcccagcaggctattggctactctcccacaaat
tctcacactagactcgacaccctttcacatcaaatcttctatccacaaagacccttgttt
aaaactgtggtgtcctatggtcttggaaaggcagagacagcctacagctttggacaaaaa
gatgactttaatacaccagaatatttcaatggccaaaatgcaatagtctcagtcaacgtt
catcagggattcaaccaagaagattctctggtgctgaatagggcctctttagagcgtggc
atgtttcgtacactacatttcaagagctataaagcacaggtcgaaaacaaagagatcact
aggcgtctcaaacacagggaaagtatcaattttggtaaagtgcaaagcaagagagggaag
gttgacagtctggaatgtgagggtttaccatatgttggagcaagtcttcaaagtggggac
attgtcattggaaaggtctcagagtctggtgaagatcatagtgccaaactgatgcatact
gagcaagggatggtggacaaggtagttctttcagcgaatgatgatggggtgaactttgca
actgttactctaagacagtctcgctcgccatgcgtcggagacaagtttgccagcatgcat
ggacagaaaggagtgattggcctattggattcccaggagaatttcccatttacttgccaa
gggatagttccagacatcgtcataaacccacatggttttccaactcgtcaaactcctggt
cagttgcttgaagctgctctggggaaggggattgccatgggtgggaaggtcaggtatgca
acaccgttcaccactccaaccgtggacgtgatcaccgaacagctgcacaaggctgggttt
tcaaggtggggtgaggagagcgtcctgaacgggcagaccggcgagcggatgaagtccttg
gtgttcatggggccgaccttctaccagcggctggtccacatggcggaggacaaggtgaag
ttccggaacacggggcccgtgcacccggtgacgcggcagccggtggaggacaagaagcgg
ttcggcggcgtcaagttcggggagatggagcgggactgcatgctcgcccacggcgccgcc
gccaacctccacgagcggctcttcacgctcagcgacttctcgcagatgcacatctgccag
gcctgcgagcgggtggccaccgtgatcatgaggcccgctgagggcggcagcaagaaggtg
cgcggcccctactgcatgttctgccgctccgcagagcgcatcgtccgcgtcaacgtgccc
tacggctccaagctgctgtaccaggagctcttcagcatgggcatctgcctcaagtttgac
accgaggtccgctag

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