Miscanthus floridulus: 136474248
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Entry
136474248 CDS
T10264
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial-like isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136474248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136474248
03016 Transfer RNA biogenesis [BR:
mflo03016
]
136474248
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
136474248
Messenger RNA biogenesis [BR:
mflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
136474248
Transfer RNA biogenesis [BR:
mflo03016
]
Prokaryotic type
tRNA degradation factors
136474248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
S1_RRP5
S1_2
CvfB_2nd
KH_1
Urease_gamma
Motif
Other DBs
NCBI-GeneID:
136474248
NCBI-ProteinID:
XP_066327934
LinkDB
All DBs
Position
8:complement(184212787..184220312)
Genome browser
AA seq
983 aa
AA seq
DB search
MSMAVASSLRSLARRRPRLRLPAAPLVVPGGRAALLSGAAEEAAPLAAAEAAAAAAPPAP
GRKVLESFREEFEIGGRSIAFETGKMARFANGSVVISMEDTHVLSTVAAAKSSEPVRDFL
PLTVDYQEKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNV
LSSDGKQDPDVMAANASSAALMLSDIPWNGPIGVIRVGRINGTFVLNPTVDELGLSDLNL
VYACSRDKTLMIDVQAREITERDLQAGMKLAHSEAIKCIDPQIRLAKRAGKENKEYKISL
ISDTSYEKIRTFSEAPIEEVFTDSSYGKFERGEALEKITQSVKAKLEEENDEDSLKFLHK
AVDTVRKQVIRKRIIEEGLRVDGRQLDEVRPLYCESNTYPVLHGSALFSRGDTQVLCTVT
LGAPGDAQRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVL
PPESDFPYTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSQVDAA
TGEISNYRILTDILGLEDHLGDMDFKIAGTKKGITAIQLDIKPAGIPLDIICESLEPARK
ARNQILDRMDQEISTARAINDGSSPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDG
TVTIVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQGLLHIS
ELSHEPVAKVSDVVTVGQSLSLRCIGQDVRGNIKLSLKATLPQPRSKKDLKSKDPLPSQV
SGWAAVENMSSVDADAEPSSTEHENGTTEEAPAFSTPSVIIRSAADYDAQDDANGPKKRA
KAAKSSPRPYKPASECHEVRKATAKKATGATTKKTKKVKIEESGSNGLQTSGSDVPEQTA
DNTLDLNQSPTNFQSGAMKLGDVVTAKVYRIRAFGLVLELSDGARGMHKFEANGQKEFEV
GQELLVKCSSFNAKGIPVFSLLD
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggcggtggcctcctccctccgctccctggcgcgccgccgaccccgcctacgc
ttgcccgctgcgccgctcgtcgtccccggcggccgcgcggcattactctccggcgcggcc
gaggaggcggccccgctggctgccgcggaagcggcggcggcggcggcgccgcctgccccg
ggccggaaggtgctggagagcttccgggaggagttcgagatcggggggcgctccatcgcc
ttcgagacgggaaagatggcgcgcttcgccaacggctccgtggtgatctccatggaagac
acccacgtcctctcaaccgtcgccgccgccaagtcctctgagcccgttcgggacttcctc
ccactaactgttgactatcaagagaaacaatatgctcaaggtgttatccccacaacatat
atgcgcagggaaggtgctcctaaggaaagagaactcctgtgtgggcgtataattgatcgg
ccaataagaccattgtttcctcctggcttttaccatgaagttcagatcatggtaaatgtt
ctttcatcagatggaaagcaagatccagatgtaatggctgcaaatgcctcttcagctgca
ctaatgctatctgatataccttggaatgggccgattggagtaatacgtgtagggagaatt
aatgggactttcgtcttaaatcctacagtggatgagctaggtttgagtgatctcaatctt
gtttatgcatgttcacgggataaaactttaatgatagatgtacaagctcgtgaaataact
gagagggatcttcaggcaggaatgaagcttgcacactctgaggcaattaaatgtatcgac
cctcaaataaggttggctaagcgagctggcaaagagaataaagaatacaagatatcactg
atttcagatacatcctatgagaaaattagaacattctcagaagcacccattgaggaagtc
ttcactgattcatcatatggcaagtttgaacggggggaagctttagaaaagatcacacaa
tctgtgaaggcaaagcttgaagaagaaaatgatgaggacagcttgaagtttcttcataag
gcagttgacacagtgagaaaacaggttatacgtaaaagaataattgaagagggacttaga
gtagatggtagacaactagatgaagtgagaccattgtattgtgaatccaacacatatcca
gtattacatgggtctgccctgttttctcgtggagacacgcaggttctttgtacagttacc
cttggtgctcctggcgatgctcagcggctggattcaattgttggccctccaacaaaacgt
ttcatgcttcactatagctttcccccattttcaataaatgaagttgccaaacgtggaggc
ctgaatcgacgagaagtaggacatggcactcttgcggagaaagcattgcttgctgtgctt
cctccagaaagtgattttccatacaccgttcgggtaaattcagaagtcatggcatcggat
ggttcaacatcaatggcatcagtatgtggaggaagtatggccttaatggatgctgggata
cctgtaagagaacatgttgctggtgtttcagtgggtcttgtaagtcaagtggacgcagct
actggagaaatttctaattatcgcatattaacggatattctgggccttgaggatcacttg
ggtgacatggacttcaaaattgcaggaacaaagaaaggtattactgctattcagctggat
ataaaacctgctggaataccattggacataatatgtgaaagtttagagcctgcacgtaag
gctcgaaatcaaatccttgaccgcatggaccaggaaataagtactgcacgtgctattaac
gatggaagttcccctcgattagctacactgagcttcagcagcgattctcttaggaaattg
cttttccacaggaaaaaaattgagcaagaaacaggtgcacgagtatcagtcagtgatggt
acggtcactattgttgctaaaactcaagaaattatggataaagctattgagaaggttgag
ttcctcgtgggacgtgaaattgaagttggtcgtacatacaaaggaattgtttcctcaatt
aaggagtatggcgcttttgtggagttcaatggtggacagcaaggcttacttcacatttca
gagttgtcacatgaaccggtagcgaaagtctcagatgttgtaactgttggccaatctctc
tctctgagatgtattggacaggatgtgcggggtaacattaaactttcacttaaagcaacc
ttaccccaaccacgtagcaagaaggatttgaaaagtaaggatcctttgccaagtcaagtt
agcggttgggctgctgtagagaacatgagtagtgtggatgctgatgctgagccatccagt
accgaacatgaaaatggcacaactgaggaggcacctgcgttttcgactccttcagttata
attcgaagtgctgctgactatgatgctcaagatgatgcaaatggtcctaagaagcgggca
aaggctgcaaagtcatctcctagaccatataaaccagccagcgaatgtcatgaggttagg
aaagctaccgctaagaaagccacaggtgctactaccaagaaaactaagaaagtaaagatt
gaggaatctggaagtaatggactgcaaaccagtggttctgatgttccagaacagactgct
gacaacactttggacctgaatcagagtcccacgaacttccaatctggggcaatgaagttg
ggtgatgtagttacagcaaaggtctaccggattcgagcctttggactagtacttgagttg
agtgatggtgcgcgtgggatgcataaatttgaggcaaatggccaaaaggaatttgaagtt
ggacaggaactactagtgaaatgttctagtttcaacgctaaggggattcctgtattctca
ttgctggactag
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