Miscanthus floridulus: 136474668
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Entry
136474668 CDS
T10264
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136474668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136474668
Spliceosome [BR:
mflo03041
]
Complex B
Other components
Prp19-related factors
136474668
Complex C
136474668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
136474668
NCBI-ProteinID:
XP_066328328
LinkDB
All DBs
Position
8:complement(204841945..204845823)
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AA seq
491 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDETIRTLYIGGLDSRII
EQDLRDQFYAHGEIESIRMVLQRAIAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQSGDQPQPPGVEGQQQQAAPASYYFNIPA
PPAAERTLYPSMDPQRMGAIVKSQDGEGKPGPQQAGQAQPSSSSAQGGYPAPPPYYHGQY
PPYYPPPPPYGGYMPPPRMPYLPQYPPYQPMLAQPAQAQASSSQQPPQAGAGQQPPHGPP
AQQQPQQPIQN
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctaggcgacaacccttacgtccggatgttaagagctgagtat
gacaaagagtgcaaaatttgtgcacgcccttttactgtctttcggtggcggcctggtcga
gatgcaaggtacaagaagactgagatttgccagacatgttgcaagctaaagaatgtctgc
caggtctgcctgctggatcttgaatatggtctgcctgttcaggtccgggatacagcactc
gctatcaattctaatgatgcaattccaaggagtgatgtcaatcgcgaatattttgcagaa
gagcatgacaggagggccagagctggcatagactatgattcttcctatgggaaggctcgt
ccaaatgataccattttgaagcttcagaggacagcaccatattacaagaggaacagagct
catgtttgtagtttctttgtgcgtggtgaatgtacaagaggagctgagtgcccttatcgt
catgagatgcctgaaactggggagttatctcagcagaacattaaagatcgctactatgga
gttaatgacccagttgcactgaaacttttgggcaaggcaggtgagatgccatccctgaca
ccgccagatgatgagactataaggaccctctacattggtggacttgatagcagaataatt
gagcaggatttgagggatcagttttatgcccatggtgagattgagtccataaggatggta
cttcaacgtgcaattgcatttgtgacatatactacaagagaaggcgcagagaaggctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgcctgaagctgatgtggggcaag
cctcaggctccaaagcctgaggaggatgagtctgggaggcaggggcaggtttcccatgga
ggactgctccctagggctgtcatatctcagcagcagagtggtgaccaacctcaaccccct
ggggtggagggccaacagcaacaggctgcaccagcatcgtactacttcaacattccagca
ccaccagcagcagagcggactctgtacccatccatggatccacagaggatgggtgctata
gtaaaatcacaggacggtgaaggcaaaccagggccgcagcaagccgggcaagctcagcca
tcaagcagctcagcacagggtggctatcctgcaccaccgccatactaccatggtcagtat
ccaccatactatccacctccaccaccatatggtggctacatgcctccaccgcgcatgccc
tacctaccacaatatccaccttaccagccgatgctagcacaaccagcacaggcacaggct
agttcatctcagcaaccaccgcaagcaggtgcaggacagcagccgcctcatggccctcca
gctcagcagcagccacagcagccaattcagaactga
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