Miscanthus floridulus: 136475571
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Entry
136475571 CDS
T10264
Name
(RefSeq) uncharacterized protein isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
mflo Miscanthus floridulus
Pathway
mflo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
136475571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mflo04131
]
136475571
Membrane trafficking [BR:
mflo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
136475571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_VPS8_2
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_EML
Clathrin
Beta-prop_HPS5
TPR_Vps41
Beta-prop_WDR5
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_TEP1_2nd
WD40
Herpes_pp85
Beta-prop_THOC3
zf-RING_2
WD40_Gbeta
zf-RING_Vps41
WD40_Prp19
zf_RING_Vps8
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
136475571
NCBI-ProteinID:
XP_066329166
LinkDB
All DBs
Position
8:5985187..5999849
Genome browser
AA seq
1921 aa
AA seq
DB search
MPASSSPAMASQHAPPRRELDLDAFLPSSPTSSASSDADAADPDHRRAVDDLLRLLSSSD
SDSDTEESSRIPGTRSRTPSRVQAPAPPPVEPSPLPSPSPPPRRSASASPSETLSSLVAR
TFSSNGASSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSVSAPVD
KVLEEEGSGSEDSKELPPTGSLEAEVEEKGNSEEVAEATNQTAGGSVGVELGEDIQAEVA
GAENAEAIKLVEASSLDSVNSVVAEDSSGHEQGDDVNLADQVGNQIEAVNEENEDDQTGD
DNHVQSGQGVDLIVVASEESSDDEHEFERSDSIMEEQVESGSLIDKVIEERVEQLEASRK
AEKNTEKKLKVSMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYMQIE
MDNPVTRAMSSPSFRSDHGSPQVLAVHRSYIAMGTSKGAVIVIPSKYSIHQADDTDAKML
FFWNQGERTQSPVTAMCFNQQGDLLLVGYGDGHMTIWDVQKSAAAKVIYGEHTAPVVHAC
FIRQSKAITGDSKGVVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLVMDESFGF
SNSSAQGNQTTSSSGGLGSMMGGVVGGVVGVDSGWKFFNEGSSPMEDGVVVMFIMHQHAL
VVRLRTNIDHVDHIETFSRPDGAREGSIAYAAWKYTSSLNESSSVDEERVSWLALAWDRQ
VQVAKFVKSKIFKHKEWKLDSAAVGVAWLDDQMLVVLNLRGQLCLFSKDGNELRRTTFVP
DGLLFDDTILHHAHFFNRFGNPERHFNSSVAVRGATVYILGPSFLTVSRLLPWKERIEAL
KRAGDWMGALDMAMRLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYISYVFEYISIA
LSNHTGKGGESDVVIEADRSLLTQRDEQYARVGGVAVEYCVHIGRNDILFDTVFSKFVAA
QSGGMFLEVLEPYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDFNQV
VRLCREHGLYGALIYLFNQGLNDFRTPLEELLSVVQNTNSKDDTSSGYRMLVYLKYCFQG
LAFPPGHGIIPRSRLHSVREELLQFLLEESKPLTSEVFKGFNASCGKCLNICYLLWMDTE
ATLEVLKCAFVQDNFEPRDELPSTVSTSVSDNEDGIDAGSPEGQNTMVQNVVDAIIDIVS
LENDVIQSVVIGKTESEFWPSEKDFGYLMEFVSFFVSHKRANASKRVVVHILTYLISSYD
DTRTRTQKEKEVLQLFNAVPRNDWNSDFVLNLCSDAHFYQACGLIFTTRNQNLAALESYM
KDKEEPFHAFIFIDKKLLELVDDEALSFHTTVISRFPELVKLSRECAFVLAIDHFCDKIQ
QILAELRSDRHSLFLFLKTAIEVHLTGKLDFSKLEVRSKQTVELQYSSTDVEDYQQRLSN
LSKLCHNPVYIDDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAA
FLQERVGDVGSALDLILSGLDEKISLFISSVENTFSGVASKSISEIKQLDIVLEMSEAHP
VLDALHASIGLCQRNSQRLDPEESQSLWFQLLDSFSEPLKKLYGIKDVNGKGARSNWSEA
PMEHLKEKRLSQQMRITKQKCLNVLRKVFSQCVGEIIEAMAGYIPLPAIMAKLLSDNGNQ
EFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCICN
CSLSKEGAISAVRLFSCGHATHLQCESEQTRSSNRESKEGCPVCLSTSDTQARSKSPMFE
NGLMKYSGAEHEVSHGIHQIHEVDHAERSCGLQQMSRYEILNNLQKAQKSFHIETLPPLK
LAPPAIYHEKIQKRTTSVGETSKHSVRSQKPQKIWQMKEQKSKQTGSRHPQKSSFLQPDS
N
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgtcgtcgtcgccggcgatggcgtcgcagcatgcgccgccgcggcgggagctg
gacctcgacgctttccttccgtcgtctccgacctcctccgcgtcctccgacgccgacgcg
gccgaccccgaccaccgccgcgccgtcgacgacctgctccgcctcctctcctcctcagac
tccgactccgacaccgaggagtccagccgcatccctggcaccagaagccggacgccgtcc
cgcgtccaagcccctgcgccgcctcccgttgagccctcgccgttgccttccccgtccccg
cccccgaggagatccgcatcggcctcgccgtcggagaccctctcctccctcgtcgcgaga
accttctcgagcaacggcgcttcctcgtcgtccaagcccctcccctcgctcttccggggc
gtccgccccagccccaagcccggcgccgcgcttgccgctgctgccgcggcgtcccgcgcg
gtcctcaccccacacgcggctgccatcaagtcccgccgatcagtctcggcgcccgtggat
aaagttctggaggaagaggggagtggctccgaagactccaaggagctccctcccactggg
agcttggaagcagaggtagaagagaagggtaattcggaagaagttgctgaggcgaccaat
caaactgcaggtgggagtgtgggtgtggaattgggagaggatatacaggcagaagtggca
ggtgcagagaatgctgaggctataaagctggtggaggcaagttctctggactctgtaaac
tctgtagttgcggaggattccagtgggcatgagcaaggtgatgatgtcaatttggccgac
caagttgggaatcaaattgaggctgtcaatgaggaaaatgaggatgaccaaactggagat
gataatcatgtgcaatcaggtcagggtgtggatcttattgtggttgcttcagaggaaagt
tctgatgatgaacatgaatttgaaagatctgacagtatcatggaagaacaagtggaatct
gggagcttaattgacaaagtgattgaagagagggtagagcagctggaggccagcaggaag
gctgagaagaacacagagaagaagctgaaggtgtcaatgaagccgttggagtgggcagag
gagcttgagaagaggcaggcctcgtttggtcaacactgggaggaaggagcagctgcgcag
cccatgcaactagagggaatcggaaagggcccaccagctatcggttacatgcaaattgag
atggacaacccagtaactcgtgccatgtcctcaccgtcgtttaggtcagaccatggctct
ccccaggtgctggccgttcataggagctatatagcaatgggcacatctaaaggtgctgtc
attgtcattccaagcaaatactccattcatcaagctgatgatacagatgcaaagatgctg
ttcttttggaaccaaggcgagaggactcagtcaccagtgactgccatgtgctttaaccaa
caaggggatcttctgctagtaggatatggtgatggtcatatgacaatttgggatgtacag
aaatctgcagcagcaaaagttatatatggcgagcatacagcaccagtagtgcatgcttgt
tttatccgccaatctaaagccatcactggggattcaaagggggtagtactattgcacacg
ttttccattatccccgtaattaatcgtttgactgtcaagggaactcagcgcctttttgat
gggaatactggaattgtgctctcagcctgtcctcttgttatggatgaatcttttggtttt
agtaactcatctgcccagggaaatcagacaacttcctccagtggtggtcttggcagcatg
atgggtggtgttgttggaggtgtggttggagtagattctggatggaagtttttcaatgaa
ggctcttctccaatggaggatggtgttgtagtcatgtttattatgcatcaacatgctctt
gtggttagactccgtaccaatattgaccatgttgaccatattgagaccttctctagacca
gatggagcacgtgagggctccatcgcgtatgctgcgtggaaatacacgtcatctttgaat
gaatcgtcatcagtagatgaagaacgagtgtcatggctagcgcttgcatgggaccgtcaa
gtgcaagttgcaaagtttgttaaatcaaagatatttaaacacaaggagtggaagcttgat
agtgcagctgttggtgttgcctggttagatgaccagatgttagttgtccttaatttgaga
gggcagctctgtttgttctctaaagatggcaatgaacttcgcagaactacctttgttcct
gatggccttcttttcgatgacaccatattgcaccatgcacatttttttaacaggtttggt
aacccagagaggcattttaatagttcagtagcggtaagaggtgctacagtgtatattctt
gggccatcttttctcacggtttcccgacttcttccatggaaagagcgaattgaagcacta
aagagggctggtgattggatgggtgcactagacatggcaatgaggctttatgatggtcaa
acacagggtgttgttgatctcccaagaacagttgattcaattagagaagccataatgcct
tacctagttgagttgctgctatcatatataagttatgtttttgaatatatttcaattgca
ctgtcaaatcatactggaaaagggggagaatcagatgttgtaatagaggcagatcgatcc
ctgcttacacaaagagatgagcagtatgctcgtgtaggaggggttgcagttgagtattgt
gtccacattggacgtaacgatatccttttcgatacagttttctctaagtttgtcgctgca
caaagtggaggtatgtttctggaggtgctagagccctatatattgaaggatatgcttggt
tctcttccccctgagatcatgcaagcactagtggagcattatagtggcaaaggatggttg
cagcgagttgaacaatgcatccttcacatggatatttcttcattggactttaatcaggta
gtcaggctttgtcgtgaacatgggctatacggtgcactaatttatttatttaaccaaggc
ctaaatgatttccgtacacctctagaggaacttctatcagttgttcagaacaccaacagt
aaagatgatacttctagtggatacaggatgcttgtttatctgaaatattgctttcagggc
ttggcatttcctccagggcatgggataattccccgatcccggcttcattcagtgagggaa
gaactcctgcaatttctgcttgaagagtctaagccactcacttctgaagtatttaagggt
ttcaatgcttcttgtggaaagtgcctaaacatatgctatctgctatggatggatactgaa
gctactttggaagttctcaaatgtgcttttgtacaggataactttgaacctagagatgaa
cttccgagtactgtcagtacatctgtctcagacaatgaagatggtattgacgctggaagc
ccagagggccaaaatactatggtacaaaatgtagttgatgccatcattgacattgttagt
ttggaaaatgatgtgattcagtccgttgtcattggtaaaactgaatcagaattttggcct
tcggagaaggattttggctatttaatggagtttgtgtcctttttcgtttcccacaaaagg
gctaatgcatctaagagagttgttgtgcacattcttacttatctcatttcatcatatgat
gacacaagaacaaggactcagaaagaaaaagaagttcttcaactcttcaatgcggttccc
cgaaatgattggaattcggattttgtcttgaacctttgttcagatgctcatttttatcag
gcctgtggcttgatatttacgaccaggaatcagaatttggctgctttagagagttacatg
aaggataaagaggaacctttccatgcttttatcttcattgataaaaagttactagaattg
gttgatgatgaagctttgtcgttccataccacagtaatatctcgctttcctgagctagtc
aagctaagcagggagtgtgcatttgtcttggccattgatcatttctgtgataagatacag
caaatattagcagagcttcgttctgaccgacacagcctctttcttttcttgaaaactgct
attgaagtacacttgactggaaaacttgacttcagtaagcttgaagtaagaagcaaacaa
actgttgaactccagtactcttctactgacgttgaggattatcagcagaggctatcaaat
ctctccaagttatgccacaatcctgtttacatcgacgacgagttagttgaactttatctg
gagcttttatgtcagtatgagcgaaggtcagttctgaagtttctggagacttttgacagt
tacagattggagcggtgcttgcatctttgcctagattatggagttacagatgctgctgca
ttcttgcaagagagggttggtgatgttgggagtgccctagaccttattctgtctggactt
gatgagaaaattagcctatttatctcttctgtggaaaatactttctctggtgtcgcatca
aaaagtatctctgagattaagcaactagacatcgttctagaaatgagtgaggctcatcca
gtgcttgatgcattgcatgcctccattggattgtgccaaaggaattcacagcgcttggac
ccagaggaatctcagtccctttggttccaattgcttgactccttctcagagccattaaaa
aaattgtatggaatcaaggatgtaaatggaaaaggtgccaggtcaaattggagtgaagca
ccaatggaacatctgaaggaaaaaagactatctcaacaaatgaggattaccaaacaaaag
tgcctaaatgttctgcgaaaagtattttcacaatgtgttggagaaataatagaggccatg
gctgggtatatacccctaccagcaatcatggcaaaactgttatccgataatgggaatcaa
gagtttggtgatttcaaacttgtgatacacagaatgttatctatgtatctttacgaaaaa
agaatactggaaacagctaagtcagtaattgaggatgactcattttataccttgagttta
ttaaagagaggagtttgtcatgggtttgctccacagacttttgtatgctgcatatgcaac
tgctcactttctaaagaaggtgctatttcagctgtacggttgttcagttgtgggcatgca
acacatcttcagtgtgagtctgagcagaccaggtcatccaatcgggaatccaaagaggga
tgccctgtctgtctctcgacaagtgatacacaagctcgaagcaaatcacctatgtttgag
aatgggctaatgaagtattctggggctgaacatgaagtgtcacatggcatccatcagatt
catgaagttgatcatgctgagagatcttgtgggcttcaacagatgtcacggtatgaaata
ctgaataatcttcagaaagcgcagaagtcctttcatatagaaactttacctccattgaaa
cttgcaccgccagctatatatcatgagaagatacagaagaggaccacttcagtcggtgaa
actagcaaacattcagttagaagtcagaaaccccagaaaatatggcaaatgaaggagcaa
aaatcaaaacagactgggagtcgtcatccacaaaagtcaagttttctacaaccagattca
aactga
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integrated database retrieval system
