Miscanthus floridulus: 136475668
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Entry
136475668 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP160-like
KO
K14303
nuclear pore complex protein Nup160
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136475668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136475668
03036 Chromosome and associated proteins [BR:
mflo03036
]
136475668
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
136475668
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
136475668
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
136475668
NCBI-ProteinID:
XP_066329345
LinkDB
All DBs
Position
8:9630119..9657540
Genome browser
AA seq
1506 aa
AA seq
DB search
MAAPAARRIVGAEVPIPGSDKLRWIDLTIPSSSAAPASPSDPFVLVPPRAASGCHIIPSG
DSQYYLSWRIHEEHPNVLEVIELSASKEFSSFGLRLVFQEALCPFAFLCEREGRRQGELV
YMLYVLTVSGVALLCHLRSPFSYVSGSVLHQDDIVEFNLQTQAQSAKVTAVTAKPGCIVI
GRQDGSICSYSLGKLAPNSPGFSNELRDDAGIGRLWTLVSRTKTVGPVQDIVATVVNERD
LLFVLHLDGHLRIWDNHMKLLNYNVHSNDMEGHPSRLWVGEADDDQELISLAILHQNTVV
QDCDYVAVYGFSFSAAERFMFSSEPSISTIPLLEGKLVDLKIATDKLWILKEFGSMLYEI
LQYDTETEKICCYVLQEDAISELLFQSSDNALDDLVWTADSMFSSLKEQAFTFISSMFLR
RLLQPGVNHCSALRETLLEHKRFLSDSEFQSLTANGLRKEILSIIEQEGSSQTASATAYH
WKQFSARYLHNWCWNNKPYGLLLDTKNEVFGLIRKGSFSLFRCLEGVEMLIYGSSDELHN
IDDLGMNLLDDISDFELLNEVLRCMGHIHHLLGRSSIAVYYESLISSIISSDEIASHIVK
ILETGFSPQSSSSLISLLGTDTYVERRQAAHKSQRKFSVEMLLSFQKLQSRSASWSSVFD
VIEKFMKCLNTNMSVQEYGSKRVCNVNSVLLVQATSQVAKTMFECAFDLFLFLSYLVGVG
GQVSLLQSDVARMKLKLFPMIRDILGQWIVLHFVGISPTSPPTIDDFSYQLSSLQLGKAD
ELSLHRKLGCSDFTLACLLDFPKSPEGDVMSPCFPSPAEVINLVRRFSSLIMCGRNFECV
QTFSGYTINLSAVLIRHGQYEAAQNLLGILETYLNNGKVSHTGQDADTACSAYLHLNGFC
LLMLAHDEANIILRESKVHDAIRCFFRAASGYEAPKALQNFSMETGFQVSGESRSIPLWR
LNYYEWAMQIFEQHSMSEGACQFALAALELVDIIDGLDNGIEAEGLPETAAMIKGRLWAN
VFKYSLDLKNFRDAYCAIVSNPDDDSKYICLRRFIIVLCDLGETKVLCSGEIPFTDLVEK
VEQELFWKAERSDLSSRPNLYKVLYSFEAHRNKWRKAAAYMYRYFVRLNREGNAGGSHQL
PHVLQERLHALSAAINALHLVDPSFAWLDSICEADDQISPSKRPRNLLMENLAFGTDSEL
SRLQFCVDIEILEKEYILTEAQYMLSTLKSIFDFSESQSIESLIDILINEKLYDIAFTIV
LKFWKESGMKKQLEHVFSVIAQQCCPNRADNKSRRSLTGSQQVPLLPSSENDAWEINNKS
IPVTQQLQGSNHWETLELYLDKYKNLHPRLPVIVAETLLYTDPEIELPLWLVQMFKTNKA
GNKISWGMSGKEADPAALFRLYINYGRHAEATNLLVEYLESFASSRPADLLHRKKMSAAW
FPYTAVERVWCQLGDMQRAGHSMDQCDRLKKLLHGALMSHLQQVVVDSDDVLSSVGDGQG
MEGQSS
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccccgccgcccggaggatagtcggcgctgaggttcccatacccggctcggac
aagctgcggtggatcgacctcaccatcccctcctcctccgccgcgccggcgagcccctcc
gatcccttcgtcctcgtgcccccgcgcgccgcctcggggtgccacatcattccttccggc
gattctcagtattacctctcgtggaggattcacgaggaacacccaaatgtgctagaggtc
attgagcttagtgcctccaaggagttctctagctttggactgcggttggtcttccaggag
gcgctatgtccatttgcatttttatgtgaaagagagggtcgcaggcaaggggagcttgta
tatatgctatatgtgcttaccgtttctggagttgctctcttgtgccacttacgcagtcca
ttttcctacgtatctggttcagtgctgcatcaggatgatatagttgagtttaatctccaa
actcaagctcagagtgcaaaggttacagcggttacagcgaagccaggatgtatagtgatt
ggtcgacaagatgggtccatctgttcttacagtcttggcaaattagccccgaactcacca
ggtttctcgaatgaactacgagatgatgctgggattggacgtttatggactctcgtgtca
agaacaaagactgtgggtcctgtgcaggatatagtggcaactgttgtaaatgaaagggac
ctgttatttgttcttcatttggatggacacttgcgcatatgggataatcacatgaaactt
ctcaactataatgttcactcaaatgatatggaaggtcatccgtctaggctatgggttggt
gaggctgatgatgatcaagagttgatatccttggcaattctgcatcagaacactgtggtt
caagattgtgattatgttgctgtgtatggcttcagtttttctgctgcggaaaggttcatg
ttctcttctgaaccttcaatttctactatacctttgctagaggggaagcttgtggacttg
aaaatagccacggataagctttggatacttaaagaatttggctccatgctatatgaaata
ttgcagtatgacaccgaaactgagaagatttgctgttatgtgctacaagaagatgctatc
agtgaactgttgtttcaaagttctgacaatgcattggatgatttggtctggacagctgat
tcaatgttctcctccttgaaggagcaggcattcacttttatttcatccatgtttctgcgg
aggctacttcaaccaggagtaaaccactgttctgccctgcgtgaaaccttactagagcac
aaaaggttcctatcggattctgagttccagtcacttacagcaaatgggctacgaaaagag
atattatctattatagaacaagagggaagttcacagacagcaagcgctacagcttatcac
tggaaacaattctctgcacggtacctccacaattggtgctggaacaataagccatatggg
ttgcttcttgatactaaaaatgaagtgtttggtttaataagaaagggttcattttctcta
ttccgttgtttggagggtgtggaaatgcttatttatggttcatctgatgaattgcacaat
attgatgaccttgggatgaacttattggatgacatatctgattttgaactcctcaatgag
gtcctcagatgcatgggccatatacaccatttactggggagatcttccatagcagtatac
tacgaatccctaattagttctattatatcgtctgatgaaattgcttcacatatagtaaag
attctagagacgggttttagtcctcaatcatcctcatccctcatttcattacttggaacg
gatacttatgtagaaagaaggcaggcagctcacaaaagtcaaaggaagttttctgttgag
atgttactatcttttcaaaagttgcaatcaagatccgcatcctggtcttcagtattcgat
gtgatcgagaagtttatgaagtgtttgaacacaaacatgagcgtccaagagtatggatca
aagagagtttgtaatgtaaattctgtgttactagttcaagctacttcacaggttgcaaaa
acaatgtttgagtgtgcatttgatctgtttctgttccttagttatctggttggtgttggt
ggccaggtctccttattgcaaagtgatgttgccagaatgaaactgaagttgttcccaatg
attcgagacatattgggacagtggattgttctccactttgtaggaatctcaccaacctca
ccaccaaccattgacgattttagctatcaactttcttctcttcagcttggtaaagcagat
gaactgtctttgcacagaaagcttggctgctctgattttacattggcttgtttacttgac
tttccaaaatctcctgaaggggacgttatgtcaccttgttttcccagtccagcggaagta
atcaatctagtaaggaggtttagtagtttgattatgtgtggaagaaattttgagtgtgta
caaactttctcgggatacacaattaatctatcagctgttctcatccgacatggtcagtat
gaagctgctcagaatctgctgggaattctggaaacatacttgaacaatggaaaagtatcc
catactggtcaagatgcagatactgcatgttcagcataccttcatctcaatggattttgc
cttctgatgcttgcacatgatgaagcaaatattattttgagagaatccaaggttcatgat
gctatccgatgctttttcagggctgcatccgggtatgaagctccaaaggctttgcagaac
ttttcaatggaaacagggtttcaagtttctggggaatctagatctattcctctgtggaga
cttaactactatgagtgggcaatgcaaatttttgagcaacactccatgagcgagggggca
tgccaatttgctcttgctgctcttgaactagttgatattattgacggtttagataatgga
attgaagctgagggtcttccagagaccgcagcaatgattaaaggacgactttgggctaat
gtattcaagtacagcttggatttgaaaaactttcgagatgcatattgcgcgatcgtctca
aacccggatgatgatagcaaatacatctgtttgaggcgtttcatcatagttctttgtgat
cttggggagacaaaggttctttgcagtggagaaattccattcactgacttggtagagaaa
gtggagcaagagctcttctggaaggctgaacgctcagatctgtcgtctagaccaaatctc
tataaggttctttattcatttgaagcacataggaacaaatggaggaaagcagctgcatac
atgtacaggtactttgttagattgaatagagaaggtaatgcaggtggcagccaccaactt
cctcacgtgttgcaagagaggttgcatgctttatctgctgctatcaacgcattgcacctt
gttgatccctcatttgcatggcttgactctatttgcgaagctgatgatcaaatttctcca
agtaaaagacctcggaatcttttgatggagaacttggcttttggcacagattctgagctc
tctagattacaattttgtgttgacattgaaatccttgaaaaagaatacatattaacagaa
gcacagtatatgctcagcactctgaaatcaatatttgatttttcagaaagccaatcaatt
gagtccctgatcgatattcttataaatgagaaattgtatgacattgccttcacaattgtg
ctcaaattttggaaggagtcaggaatgaaaaagcaattggagcatgtcttttcagtcatt
gctcagcaatgctgcccgaacagagcagacaacaaatcaaggagaagtttgactggcagt
caacaagtgccactgctgccttcttctgagaatgatgcatgggagatcaacaataagagt
attcctgtgacccaacaactgcaggggagcaaccactgggaaacccttgaactatatttg
gataaatacaaaaatctgcatcctaggttgccagtcattgttgctgagacgcttctttat
actgatcccgagattgagctaccactttggttggttcagatgttcaagactaacaaggca
gggaacaagatctcgtggggcatgtctgggaaagaggcagatcctgccgccttattcaga
ctatacataaactacggacgccatgcagaagccaccaacttgctggtggagtatttagag
tcgttcgcatcatcgaggccagcggaccttctccaccgcaagaagatgtctgccgcttgg
ttcccgtacacggccgtggagagggtgtggtgccaactgggtgacatgcaacgcgccggc
cacagcatggatcagtgcgaccggctcaagaagctgctgcacggagccctgatgagccac
ttgcagcaggttgtggtcgactcggatgacgtgctgtcgtcagttggagatgggcagggg
atggagggccagagcagctga
DBGET
integrated database retrieval system
