KEGG   Miscanthus floridulus: 136475683
Entry
136475683         CDS       T10264                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136475683
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mflo03021]
    136475683
Enzymes [BR:mflo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     136475683
Transcription machinery [BR:mflo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     136475683
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 136475683
NCBI-ProteinID: XP_066329367
LinkDB
Position
8:10116376..10130821
AA seq 2006 aa
MEEDHSAILVSEGAIKSIKLSLSTGEEICTYSVNECPVTHPSQLGNPFLGLPLEAGKCES
CGASENDKCEGHFGYIELPVPIYHPCHVSELRQLLSLICLKCLRIKKGKVKQSNGKGNVS
ATLCSYCRDIPALSVKEVKTADGWIRLELRAPHKRHMTERSWNFLDKYGFHHGGCSQVRT
LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SIALLKKVLQKIEQIKRSRSGSPNFESHDLESCDLQLAIGQYIRLRGTTRGPQDNTKRFT
VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE
QVTDININRLQEVVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN
RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF
SVERQLISSHSGKVNLQLGNDCLVAMKFMSHRTMLHKELANQLAMFVPFSLLAPAVMKPI
PSWTITQIVQGAIPAKLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPRE
ALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIQNQSLILEQSRCSTSQFV
ELRVENNLKSVKQQISEYVGKFSDLGLLIDLKKEASMAKVVQQVGFVGLQLYREGKLYSR
RLVEDCFSNFVNKHSAIGDDYPPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGL
SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLA
ATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLSDCSCAKKFCK
ERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLERINIS
IQDILQKCQEVSGRYGKKKGHLCHLLKKITFATGDCSFTQMPIDGKLHKVPCVQFSFSDD
NTVLSESVERAVNVIADSVCSVLLDTIIKGDPRIQAAKVIWVESDATSWVKNTRKVSKGE
PALEIIVEKDDAVSNGDAWRTTIDACLPVLDLIDTRRSIPYGIQQVRELIGISCAFDQVV
QRLSTTVKMVNKGVLKDHLILVANSMTCTGSLIGFNIAGYKATFRSLKVQVPFTESTLFT
PMKCFEKAAEKCDSDSLGCVVSSSSWGKHAAVGTGSSFQILWNENQLKSNKEYGDGLYDF
LALVRTDQEKTGYMFLDDVDYLVEENAVDDMCLSPEPDGTLGKPTFEDNFEEQNIQKGSS
WENGTTMNSSWEQNASAANDSGDWGGWGSGVGAAAKPADQDNSWEVHAKVPDNSTDWGGW
SSGGGAAAKPADQDNSWEVHAKVQDNSTDWGGWSTEKPTGEATVSGQPAEMDTWADKGAQ
MDSDAGDDNWEKKSSTPEASNKNDPWGKSENTWDKRKGDGGDGAWEKKSDDGHGNWEHPS
NWNGQSLNVDQDTWGNARGKKKADGNCQWEEQPSTYKRKKTNADHDSSYNNVMLPSDNAW
NAGDGIGRPNAKSKAKDKMESDEHLKVPKESDTWNIGKSNESPWDNTDALQDSWVNSATR
NNNTQGGSWDKVVAIKDPDSQQDSWSNVTIQKNDAQNDSWDNVADKAPNSAAEDSWGNLA
ATPVGNSDAKQSDSWDGWNAVPAENSQGTAQWKETTDSGNKDWKADGWGAKSGNWSSQRN
NPGRPPRRPDERGPPPPRQRFELTIEEKNILLEVEPIILRVRRIFREACDGVRLKPEDEK
FIQERVLEHHPEKQSKVSGEIDHLMVNKHDTFQDTRCFFVVSTDGSQADFSYLKCLENFV
RKNYTEDVDSFCMKYLRPRRRQAPPPDVGTAPGALTEVTLPTAAETEQGTPAPPAEVPQE
TLGSPAVALEGSHNPRTEPTDNTELLGKEPDLTPASPAAAPQEAPEPDPTDDTGLLGKEA
KPNLTPSSPCEAMQATADPDSTWTDI
NT seq 6021 nt   +upstreamnt  +downstreamnt
atggaggaggatcactcggcgatactagtctctgaaggtgctattaaaagcatcaaactt
agcctctctaccggagaagagatatgcacctattcggtaaacgagtgtccagtgacccac
cctagccagcttggaaatccattccttgggttgccccttgaagctgggaaatgtgaatca
tgtggggcgtctgaaaatgacaaatgcgaagggcattttgggtacattgagctacctgta
cccatataccatccctgccatgtcagtgaactgaggcaactattgagcttgatatgtctg
aaatgccttcgaatcaagaaagggaaggtgaaacaaagtaatggaaaaggaaatgtgtca
gcaacattgtgctcttattgccgggatattccagctctgtctgtgaaggaagtcaagaca
gcagatggttggattcgtttagagttgagagcacctcataagagacacatgacagaacgt
tcatggaactttcttgataaatatggatttcatcatggtggatgttctcaagttaggaca
ctgcttccagaagaggctctgaatatattgaagaaggttcctgatgatactaggagaaag
ctagctgcacggggatacattgttcagactgggtatgtgatgaagtaccttccagtacct
ccgaactgtctatatattccagagttcaccgatgggcagagcatcatgtcatatgacatt
tcaatagctttgttgaagaaggttcttcagaagatagaacaaattaaaagatcaagatct
ggttccccaaactttgaatcacatgatcttgaatcatgcgatttgcagcttgcgattggc
cagtacatacgtctaaggggcactacaaggggccctcaagacaacaccaagcggtttact
gttggcagtgctgattcagctgcattgtcaacaaaacagtggttagaaaagatgcggacg
ctgtttatcagcaaagggtcaggtttttcatctcgcagcgttctgacaggagacccatat
attgggctaggtgtagtagggcttccttctgaagttgctaagaggatgacctttgaagaa
caggtcactgacataaacattaacagattgcaagaggtggtagacaagggactctgcttg
acctacagagatggtcaagcaacatatgcgataactgttggatcaaaagggcacacaaca
cttaaagttggtcaaactatcagtaggagaattgttgatggggatgttgtgttcctcaat
aggccgcccagcacacataagcattctcttcaagctttctacgcatatgtgcatgatgat
catacggtaaaaatcaatcctctcatgtgtggccccttttctgctgactttgatggtgat
tgcgtgcatatatattatccgcaatcgcttgctgcaaaagctgaagccttggagcttttt
agtgttgagagacaactgattagttcccacagtgggaaggttaacctccagctaggtaac
gactgtttggtagctatgaagttcatgtctcacagaacgatgttacacaaggaactagca
aaccagctggcaatgtttgtgccattttcacttctggcccctgctgtaatgaagccaatt
ccgtcttggacaatcacacagatagtgcaaggtgcgataccagctaaattgacttgccaa
ggggacacacacttggttagggacagcacaatcataaagctggatcttgacaaagaatct
gttcaggactcattcccagatttggtgtcctccatccttcgtgagaagggtccaagagag
gctctgcaatttctgaatgtgctggagccattgttgatggagtttttacttctcgacggt
ttgagtataagcctgcgggattttaatgttcccaaggctctattggaggaagcacaaaag
gacattcagaatcagtcccttattcttgaacagtcaaggtgttctacaagtcaattcgta
gaattacgagtcgaaaacaatttgaaaagtgtcaagcaacaaatttcggaatatgttggg
aaattctctgaccttgggttgcttattgatctgaaaaaggaagcctcaatggcaaaagta
gtacaacaggttggttttgttggcttgcaactttaccgcgaaggaaagttgtattcaagg
cgcttggtagaggactgcttttcgaactttgtgaataaacactcggccattggagatgac
tatcctccagaagcttttggcctcgtgcaaagttcatattttcatggtctgaatccgtat
gaagagctggtacatgctatatgtactagagaaactatgatccgctcctctagagggctg
tcagaacctggaactttgtttaagaatttaatggccatcttgagggatgtagttatatgt
tatgatggaactgtgagaaacatttgtagcaattccatcattcaacttaagtatggggaa
gatgatgaagctgattcttcaagtgctgtacctcctggtgaacctgtgggtgtcttagct
gccacagctatctcaaaccctgcatacaaggctgtcttggattcctcccaaagtaacaat
gcttcttgggagtcaatgaaggaaattcttcagacaagaacttcctataaaaacgatgtg
aaagataggaaagttgtcctgttcctgagtgactgctcttgtgctaagaagttctgcaag
gaaagggctgcacttgcagtacagagttgtcttaagagagtcacacttggggattgtgct
actgatatctgcattgagcatcagaagcaaataaatttagatggaacatctgaagctgcc
ccaactcttgtaggccatattcatctggacaagggacatttagaaaggataaacattagt
attcaagacattctccaaaaatgccaagaagtttctgggagatatggaaagaagaaagga
cacctttgccatctcttaaaaaaaattacttttgctactggtgattgttcattcactcag
atgccaatcgatggaaagctacataaggttccatgtgtgcagttttctttctctgatgac
aacactgtattatctgagtctgttgagagagcggtgaatgtgatagctgactctgtctgc
tcagtgcttttagatacaattattaaaggtgatcctcgaattcaagcggcaaaagttatc
tgggttgaatcagatgcaacctcttgggtaaaaaacacacggaaggtatcaaagggtgag
ccggcgttagaaatcattgttgaaaaagatgatgctgtaagcaatggggatgcctggagg
acaacaattgatgcctgcttacctgtacttgacctcattgacacacggaggtctattcca
tatggcattcagcaagtgagggaacttattggcatctcatgtgccttcgatcaagttgtg
cagcggctttcaacgactgtaaaaatggttaataaaggagttctcaaggaccatttgata
cttgtggcaaacagcatgacgtgcactggaagtttgattgggttcaacattgctggctac
aaggcaactttccgttcgttaaaagttcaagtgcctttcactgagtccactttgtttacc
cctatgaaatgctttgagaaggctgcagaaaaatgcgattctgattcattgggatgtgtg
gtctcatcatcctcatggggcaagcatgcagcagttggtactggctcatcttttcaaatt
ctctggaatgaaaatcagctgaaaagcaacaaggagtatggtgatgggctgtatgatttc
ttagcgttggtcagaaccgaccaagaaaagacagggtacatgttcttggatgatgttgac
taccttgtagaagagaatgcagtagatgacatgtgcttatctcctgagcctgatgggacc
ctgggtaagcccacctttgaggataatttcgaagagcaaaatattcagaaaggcagctca
tgggaaaatggcacaacaatgaactcaagttgggaacaaaatgctagtgctgcgaatgat
tctggtgactggggaggctggggtagtggagttggagctgctgcaaagccagcagatcaa
gataattcatgggaagtgcatgctaaggtgccggacaattccactgattggggaggctgg
agtagtggaggtggagcggctgcaaagccagcggatcaagataattcatgggaagtgcat
gctaaggtgcaggacaattccactgattggggaggctggagcactgagaagccaacaggc
gaggcaactgtatctggacaaccagctgaaatggatacttgggctgataagggtgctcaa
atggattcagatgcaggtgatgataattgggagaagaagtccagcactcctgaggcatca
aataaaaatgacccatggggcaaatcagaaaatacatgggacaaaagaaaaggagatgga
ggtgatggtgcctgggagaagaagtctgatgatggccatggcaattgggagcatcccagc
aactggaatgggcagagtttgaatgtagatcaggacacgtggggaaatgccaggggcaaa
aagaaggcagatggtaactgccaatgggaggagcagccaagcacttacaaacggaagaag
acaaatgctgatcatgattcctcctataacaatgtgatgctaccatcagacaatgcttgg
aatgctggagatggaattggaagaccaaatgccaagtctaaagcaaaagataagatggag
tctgatgagcatctgaaagtcccaaaagaatcagacacatggaatatagggaaatcaaat
gaaagtccatgggataacactgatgcactacaggattcctgggttaacagtgcaactcgc
aataacaacactcagggtggttcatgggacaaagtagtagctataaaggatcctgattca
cagcaagattcatggagtaatgtgacaatccagaagaatgatgcacagaatgattcttgg
gacaatgtagcagataaggccccaaattctgccgcagaagactcatggggtaatctggct
gcaacaccagtgggcaattcagatgctaagcaatcagattcttgggatggctggaatgct
gtgcctgctgagaactcacaaggtactgctcaatggaaagagacaactgattctggtaac
aaggactggaaagcagatggatggggtgccaaatctggtaactggagcagccaaagaaac
aatcctgggagacccccaaggagaccggatgagaggggtccacctccaccaagacaacgg
tttgaactaacaatagaggagaagaacattcttctagaagttgaacccataatattacgt
gtgagaaggatcttccgtgaagcatgtgatggtgtgaggctcaagccagaagatgaaaag
tttatccaggagagagttctcgagcaccacccggaaaagcaatccaaggtgtctggtgaa
atcgaccatctaatggtcaacaagcatgatactttccaggacactcggtgctttttcgtg
gtctccacagatggatcccaagcagatttctcctacttgaagtgcctggagaattttgtg
aggaagaactacacggaggatgtcgactcattctgcatgaaatacttaaggccacgtcgc
aggcaagcaccaccacctgatgttgggacagcaccaggcgctctgactgaggttacactg
cctaccgcagctgagaccgagcaaggcactccagcccctccagcagaggttccacaagag
actctgggttctcctgcagtggctctggaaggatctcacaatcccaggacagaaccaacc
gacaatactgagcttctaggaaaggagcccgatctgactccagcttctccagctgcggca
ccgcaagaggctcctgagccagacccaaccgacgacaccgggcttctaggaaaggaagcc
aagcctaatctgactccatcttctccatgtgaggctatgcaagcgactgcggacccagac
tcaacgtggactgatatttag

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