KEGG   Miscanthus floridulus: 136475700
Entry
136475700         CDS       T10264                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136475700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mflo03021]
    136475700
Enzymes [BR:mflo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     136475700
Transcription machinery [BR:mflo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     136475700
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 136475700
NCBI-ProteinID: XP_066329387
LinkDB
Position
8:complement(11620147..11634295)
AA seq 1978 aa
MEEDHSAILVSEGAIKSIKLSLSTGEEICTYSVNECPVTHPSQLGNPFLGLPLEAGKCES
CGASENDKCEGHFGYIELPVPIYHPCHVSELRQLLSLICLKCLRIKKGKVKQSNGKGNVS
ATLCSYCRDIPALSVKEVKTADGWIRLELRAPHKRHMTERSWNFLDKYGFHHGGCSQVRT
LLPEEALNILKKVPDDTRRKLAARGYIVQTGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SIALLKKVLQKIEQIKRSRSGSPNFESHDLESCDLQLAIGQYIRLRGTTRGPQDNTKRFT
VGSADSAALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGLGVVGLPSEVAKRMTFEE
QVTDININRLQEVVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLN
RPPSTHKHSLQAFYAYVHDDHTVKINPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELF
SVERQLISSHSGKVNLQLGNDCLVAMKFMSHRAMLHKELANQLAMFVPFSLLAPAVMKPI
PSWTITQIVQGAIPAKLTCQGDTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPRE
ALQFLNVLEPLLMEFLLLDGLSISLRDFNVPKALLEEAQKDIQNQSLILEQSRCSTSQFV
ELRVENNLKSVKQQISEYVGKFSDLGLLIDLKKEASMAKVVQQVGFVGLQLYREGKLYSR
RLVEDCFSNFVNKHSAIGDEYPPEAFGLVQSSYFHGLNPYEELVHAICTRETMIRSSRGL
SEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQLKYGEDDEADSSSAVPPGEPVGVLA
ATAISNPAYKAVLDSSQSNNASWESMKEILQTRTSYKNDVKDRKVVLFLSDCSCAKKFCK
ERAALAVQSCLKRVTLGDCATDICIEHQKQINLDGTSEAAPTLVGHIHLDKGHLERINIS
IQDILQKCQEVSGRYGKKKGHLCHLLKKITFATGDCSFTQMPIDGKLHKVPCVQFSFSDD
NTVLSESVERAVNVIADSVCSVLLDIIIKGDPRIQAAKVIWVESDATSWVKNTRKVSKGE
PALEIIVEKDDAVSNGDAWRTTIDACLPVLDLIDTRRSIPYGIQQVRELIGISCAFDQVV
QRLSTTVKMVNKGVLKDHLILVANSMTCTGSLIGFNIAGYKATFRSLKVQVPFTESTLFT
PMKCFEKAAEKCDSDSLGCVVSSSSWGKHAAVGTGSSFQILWNENQLKSNKEYGDGLYDF
LALVRTDQEKTGYMFLDDVDYLVEENAVDDMCLSPEPDGTLGKPTFEDNFEEQNIQKGSS
WENGTTMNSSWEQNASAANDSSDWGGWGSGVGAAAKPADQDNSWEVHAKVQDNSTDWGGW
STEKPTGEATVSGQPAEMDTWADKGAKMDSDAGDDNWEKKSSTPEASNKNDPWGKSENTW
DKRKGDGGDGAWEKKSDDGHGNWEHPSNWNGQSLNVDQDTWGNARGKKKADGNCQWEEQP
STYKRKKTNADHDSSYNNAMPPPGNAWNAGDGIGRPNAKSNAGSSWGEKDKMESDEHLKV
PKESDTWNTGKSNESPWDNTDALQDSWVTSATRNNNTQDGSWDKVVAIKDPDSQQDSWSN
VTIQKNDAQNDSWDNVADKAPNSAAEDSWGNLAATPVGNSDAKQSDSWDGWNAVPAENSQ
GTAQWKETTDSGKDWKADGWGAKSGNWSSQRNNPGRPPRRPDERGPPPPRQRFELTIEEK
NILLEVEPIIFCVRRIFREACDGVRLKPEDEKFIQERVLEHHPEKQSKVSGEIDHIMVNK
HHTFQDTRCFFVVSTDGSQADFSYLKCLENFVRKNYTEDVDSFCMKYLRPRRRQAPPPDV
GTAPGALTEVTLSTAAETEQGTPAPPAEVPQETLGSPAVALEGSHNPRTEPTDDTELLGK
EPDLTPASPAAAPQEAPEPDPTDDTGLLGKEAKPDLTPSSPGEAMQATADPDSTWTDI
NT seq 5937 nt   +upstreamnt  +downstreamnt
atggaggaggatcactcggcgatactagtctctgaaggtgctattaaaagcatcaaactt
agcctctctaccggagaagagatatgcacctactcggtaaacgagtgtccagtgacccac
cctagccagcttggaaatccattccttgggttgccccttgaagctgggaaatgtgaatca
tgtggggcgtctgaaaatgacaaatgcgaagggcattttgggtacattgagctacctgta
cccatataccatccctgccatgtcagtgaactgaggcaactattgagcttgatatgtctg
aaatgccttcgaatcaagaaagggaaggtgaaacaaagtaatggaaaaggaaatgtgtca
gcaacattgtgctcttattgccgggatattccagctctgtctgtgaaggaagtcaagaca
gcagatggttggattcgtttagagttgagagcacctcataagagacacatgacagaacgt
tcatggaactttcttgataaatatggatttcatcatggtggatgttctcaagttaggaca
ctgcttccagaagaggctcttaatatattgaagaaggttcctgatgatactaggagaaag
ctagctgcacggggatacattgttcagactgggtatgtgatgaagtaccttccagtacct
ccgaactgtctatatattccagagttcaccgatgggcagagcatcatgtcatatgacatt
tcaatagctttgttgaagaaggttcttcagaagatagaacaaattaaaagatcaagatct
ggttccccaaactttgaatcacatgatcttgaatcatgcgatttgcagcttgcgattggc
cagtacatacgtctaaggggcactacaaggggccctcaagacaacaccaagcggtttact
gttggcagtgctgattcagctgcattgtcaacaaaacagtggttagaaaagatgcggacg
ctgtttatcagcaaagggtcaggtttttcatctcgcagcgttctgacaggagacccatat
attgggctaggtgtagtagggcttccttctgaagttgctaagaggatgacctttgaagaa
caggtcactgacataaacattaacagattgcaagaggtggtagacaagggactctgcttg
acctacagagatggtcaagcaacatatgccataactgttggatcaaaagggcacacaaca
cttaaagttggtcaaactatcagtaggagaattgttgatggggatgttgtgttcctcaat
aggccgcccagcacacataagcattctcttcaagctttctacgcatatgtgcatgatgat
catacggtaaaaatcaatcctctcatgtgtggccccttttctgctgactttgatggtgat
tgcgtgcatatatattatccgcaatcgcttgctgcaaaagctgaagccttggagcttttt
agtgttgagagacaactgattagttcccacagtgggaaggttaacctccagctaggtaac
gactgtttggtagctatgaagttcatgtctcacagagcgatgttacacaaggaactagca
aaccagctggcaatgtttgtgccattttcacttctggcccctgctgtaatgaagccaatt
ccgtcttggacaatcacacagatagtgcaaggtgcgataccagctaaattgacttgccaa
ggggacacacacttggttagggacagcacaatcataaagctggatcttgacaaagaatct
gttcaggactcattcccagatttggtgtcctccatccttcgtgagaagggtccaagagag
gctctgcaatttctgaatgtgctggagccattgttgatggagtttttacttctcgacggt
ttgagtataagcctgcgggattttaatgttcccaaggctctattggaggaagcacaaaaa
gacattcagaatcagtcccttattcttgagcagtcaaggtgttctacaagtcaattcgta
gaattacgagtcgaaaacaatttgaaaagtgtcaagcaacagatttcggaatatgttggg
aaattctctgaccttgggttgcttattgatctgaaaaaggaagcctcaatggcaaaagta
gtacaacaggttggttttgttggcttgcaactgtaccgcgaaggtaagttgtattcaagg
cgcttggtagaggactgcttttcgaactttgtgaataaacactcggccattggagatgag
tatcctccagaagcttttggcctcgtgcaaagttcatattttcatggtctgaatccgtat
gaagagctggtacatgctatatgtactagagaaactatgatccgctcctctagagggctg
tcagaacctggaactttgtttaagaatttaatggccatcttgagggatgtagttatatgt
tatgatggaactgtgagaaacatttgtagcaattccatcattcaacttaagtatggggaa
gatgatgaagctgattcttcaagtgctgtacctcctggtgaacctgtgggtgtcttagct
gccacagctatatcgaaccctgcatacaaggctgtcttggattcctcccaaagtaacaat
gcttcttgggagtcaatgaaggaaattcttcagacaagaacttcctataaaaacgatgtg
aaagataggaaagttgtcctgttcctgagtgactgctcttgtgctaagaagttctgcaag
gaaagggctgcacttgcagtacagagttgtcttaagagagtcacacttggggattgtgct
actgatatctgcattgagcatcagaagcaaataaatttagatggaacatctgaagctgcc
ccaactcttgtaggccatattcatctggacaagggacatttagaaaggataaacattagt
attcaagacattctccaaaaatgccaagaagtttctgggagatatggaaagaagaaagga
cacctttgccatctcttaaaaaaaattacttttgctactggtgattgttcattcactcag
atgccaatcgatggaaagctacataaggttccatgtgtgcagttctctttctctgatgac
aacactgtattatctgagtctgttgagagagcagtgaatgtgatagctgactctgtctgc
tcagtgcttttagatataattattaaaggtgatcctcgaattcaagcggcaaaagttatc
tgggttgaatcagatgcaacctcttgggtaaaaaacacacggaaggtatcaaagggtgag
ccggcgttagaaatcattgttgaaaaagatgatgctgtaagcaatggtgatgcctggagg
acaacaattgatgcctgcttacctgtacttgacctcattgacacacggaggtctattcca
tatggcattcagcaagtgagggaacttattggcatctcatgtgccttcgatcaagttgtg
cagcggctttcaacgactgtaaaaatggttaataaaggagttctcaaggaccatttgata
cttgtggcaaacagcatgacgtgcactggaagtttgattgggttcaacattgctggctac
aaggcaactttccgttcgttaaaagttcaagtgcctttcaccgagtccactttgtttacc
cctatgaaatgctttgagaaggctgcagaaaaatgcgattctgattcattgggatgtgtg
gtctcatcatcctcatggggcaagcatgcagcagttggtactggctcatcttttcaaatt
ctctggaatgaaaatcagctgaaaagcaacaaggagtatggtgatgggctgtatgatttc
ttagcgttggtcagaaccgaccaagaaaagacagggtacatgttcttggatgatgttgac
taccttgtagaagagaatgcagtagatgacatgtgcttatctcctgagcctgatgggacc
cttggtaagcccacctttgaggataatttcgaagagcaaaatattcagaaaggcagctca
tgggaaaatggcacaacaatgaactcaagttgggaacaaaatgctagtgccgcgaatgat
tctagtgactggggaggctggggtagtggagttggagctgctgcaaagccagcagatcaa
gataattcatgggaagtgcatgctaaggtgcaggacaattccactgattggggaggctgg
agcactgagaagccaacaggcgaggcaactgtatctggacaaccagctgaaatggatact
tgggctgataagggtgctaaaatggattcagatgcaggtgatgataattgggagaagaag
tccagcactcctgaggcgtcaaataaaaatgacccatggggcaaatcagaaaatacatgg
gacaaaagaaaaggagatggaggtgatggtgcctgggagaagaagtctgatgatggccat
ggcaattgggagcatcccagcaactggaatgggcagagtttgaatgtagatcaggacacg
tggggaaatgccaggggcaaaaagaaggcagatggtaactgccaatgggaggagcagcca
agcacttacaaacggaagaagacaaatgctgatcatgattcctcctataacaatgcgatg
ccaccaccaggcaatgcttggaatgctggagatggaattggaagaccaaatgccaagtct
aatgcaggatccagttggggtgagaaagataagatggagtctgatgagcatctgaaagtc
ccaaaagaatcagacacatggaatacagggaaatcaaatgaaagtccatgggataacact
gatgcactacaggattcctgggttaccagtgcaactcgcaataacaacactcaggatggt
tcatgggacaaagtagtagctataaaggatcctgattcacagcaagattcatggagtaat
gtgacaatccagaagaatgatgcacagaatgattcttgggataatgtagcagataaggcc
ccaaattctgccgcagaagactcctggggtaatctggctgcaacaccagtgggcaattca
gatgctaagcaatcagattcttgggatggctggaatgctgtgcctgctgagaactcacaa
ggtactgcccaatggaaagagacaactgattctggtaaggactggaaagcagatggatgg
ggtgccaaatctggtaactggagcagccaaagaaacaatcctgggagacccccaaggaga
ccggatgagaggggtccacctccaccaagacaacggtttgaactaacaatagaggagaag
aacattcttctagaagttgaacccataatattctgtgtgagaaggatcttccgtgaagca
tgtgatggtgtgaggctcaagccagaagacgaaaagtttatccaggagagagttctcgag
caccacccagaaaagcaatccaaggtgtctggtgaaatcgaccatataatggtcaacaag
catcatactttccaggacactcggtgctttttcgtggtctccacagatggatcccaagca
gatttctcctacttgaagtgcctggagaattttgtgaggaagaactacacggaggatgtc
gactcattctgcatgaaatacttaaggccacgtcgcaggcaagcaccaccacctgatgtt
gggacagcaccaggcgctctgactgaggttacactgtctaccgcagctgagaccgagcaa
ggcactccagcccctccagcagaggttccacaagagactctgggttctcctgcagtggct
ctggaaggatctcacaatcccaggacagaaccaaccgacgatactgagcttctaggaaag
gagcccgatctgactccagcttctccagctgcggcaccgcaagaggcacctgagccagac
ccaaccgacgataccgggcttctaggaaaggaagccaagcctgatctgactccatcttct
ccaggtgaggctatgcaagcgactgcggacccagactcaacgtggactgatatttag

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