Miscanthus floridulus: 136476079
Help
Entry
136476079 CDS
T10264
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mflo Miscanthus floridulus
Pathway
mflo00040
Pentose and glucuronate interconversions
mflo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
136476079
Enzymes [BR:
mflo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
136476079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
136476079
NCBI-ProteinID:
XP_066329854
LinkDB
All DBs
Position
8:complement(29743217..29745206)
Genome browser
AA seq
443 aa
AA seq
DB search
METKLRWSRPGSLLLVAAAFLASAAMSSANIGDFDEHWQKRKELAEASVRETYRPDPYNV
TNSFNVAVHRASSPRRAMREMPRKHKRSTGPCRATNPIDKCWRCRNDWATDRFRLARCAR
GFGHATTGGLGGPIYIVTDPSDGDVVNPRPGTLRWGVIQPGPLWIIFARSMIIQLSQELL
VSSDKTIDGRGAQVHIANGAGITVQLSRNVIIHNLHVHDVVHSMGGLMRDSPTHVGSRTK
ADGDGISLFQATNVWIDHISMSNCEDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSY
PQDQMMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGKAPTIISQGNR
YIAPPNIAAKVITKHYAEEGEWKNWVWHTEDDLFMNGAIFEPSGGAVPRKINGNEWVKPK
PGTYVTRLTRFSGTLSCCTGKPC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaagctccggtggagccggcccggctcccttctcctcgtcgccgcggcgttc
ctggcgtccgccgccatgtcgagcgccaacatcggcgacttcgacgagcactggcagaag
cgcaaggagctggccgaggcgtcggtgagggagacgtacaggcccgacccgtacaacgtc
accaacagcttcaacgtcgccgtgcacagagctagcagcccgcggcgtgcgatgcgggag
atgcctcggaagcacaagaggtcgacgggcccgtgccgggcgacgaacccgatcgacaag
tgctggcgctgccgcaacgactgggcgacggaccggttccgtctggcccggtgtgccagg
gggttcgggcacgcgaccaccggcggcctcggcggccccatctacatcgtgacggacccc
agcgacggcgacgtggtgaacccgcggcccggcacgctccggtggggcgtgatccagccc
ggcccgctgtggatcatcttcgcccggtccatgatcatccagctgtcgcaggagctgctg
gtgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcacatcgccaacggcgcc
gggatcacggtgcagctgtctcggaacgtgatcatccacaacctgcacgtgcacgacgtg
gtgcactccatgggcgggctgatgcgggactccccgacgcacgtcgggtcccgcaccaag
gccgacggcgacggcatctcgctgttccaggccaccaacgtgtggatcgaccacatctcc
atgtccaactgcgaggacgggctcatcgacgtggtgcagagctccacggggatcaccatc
tccaactgccacttcaccaaccacaacgacgtgatgctgttcggcgccagcgactcgtac
ccgcaggaccagatgatgcagatcaccgtcgccttcaaccacttcggcagggggctcgtg
cagcggatgcccaggtgccggtggggattcttccacgtcgtcaacaacgactacacgcac
tggctcatgtacgccatcggcggcggcaaggcgcccaccatcatcagccagggcaaccga
tacattgcaccacccaacatcgccgccaaagtgatcaccaagcactacgcggaagagggc
gagtggaagaactgggtgtggcacacggaggacgacctgttcatgaacggcgccatcttc
gagccgtccggcggcgcggtccccaggaagatcaacgggaacgagtgggtcaagcccaag
ccaggcacctacgtcacaaggctcacccgcttctccggcacattgtcctgctgcacgggc
aagccgtgctga
DBGET
integrated database retrieval system
