KEGG   Miscanthus floridulus: 136476083
Entry
136476083         CDS       T10264                                 
Name
(RefSeq) probable histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03082  ATP-dependent chromatin remodeling
mflo03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    136476083
   03083 Polycomb repressive complex
    136476083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mflo03036]
    136476083
Enzymes [BR:mflo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     136476083
Chromosome and associated proteins [BR:mflo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     136476083
   HDAC complexes
    Sin3A-HDAC complex
     136476083
    BRAF-HDAC complex
     136476083
    REST complex
     136476083
    SHIP complex
     136476083
    MiDAC complex
     136476083
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     136476083
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    136476083
  Chromatin remodeling factors
   NuRD complex
    136476083
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 136476083
NCBI-ProteinID: XP_066329858
LinkDB
Position
8:29799173..29804069
AA seq 512 aa
MDPSSAGSGGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHAMKPHRIRMTHSLLARYG
LLNQMQVYRPNPARDRDLCRFHADDYINFLRSVTPETQQDQIRLLKRFNVGEDCPVFDGL
YSFCQTYAGASVGGAVKLNHGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH
ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGEYYSLNVP
LDDGIDDESYQSLFKPIVGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRY
MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQELEDKMPVNEYYEYFGPDYTLHVAP
SNMENKNTRYQLDDIRSKLLDNLSKLRHAPSVQFQERVPDTEVPEPDEDQDDPDERHDPD
SDMEVDDHKAVDESARRRVKREFGENETKVQDGGRVASDHRGLEPMAEDIGSSKQAPQAD
ASAISVDEPSNVKNEPESSTKLQDQAAAYHKP
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggacccgtcatcggcgggctccggcggcaactccctcccgtccgttggccccgacggg
cagaagcggcgcgtgtgctacttctacgacccggatgtgggcaactactactacgggcag
ggccatgcgatgaagccgcaccgcatccggatgacgcactcgctgctggcgcgctacggc
ctcctcaaccagatgcaggtgtaccggcccaacccggcccgcgaccgcgacctctgccgc
ttccacgccgacgactacatcaacttcctgcgctccgtcacccccgagacgcagcaggac
cagatccgcctgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctc
tacagcttctgccagacctacgcgggcgcctccgtcggcggggccgtcaagctcaaccac
ggccacgacatcgcaatcaactggtccggcggcctccaccatgcgaagaagtgcgaggcg
tcgggcttctgctacgtcaacgacatcgtgctcgccatactcgagctgctcaagcatcac
gagagagttctgtatgtcgacatcgatatccaccatggggacggagtggaggaggctttc
tacacaacagacagggttatgacagtttcgttccacaagtttggggattatttccctgga
acaggggatatccgtgacattgggcactcaaagggggagtactactccctgaatgtccct
ctggatgatgggattgatgatgaaagctaccagtcccttttcaagccaatcgtgggcaaa
gttatggaggttttccgccctggcgcagttgtgcttcagtgtggtgctgattccttgtct
ggggataggttgggctgctttaatctttcaatcagaggtcatgcggaatgtgttaggtac
atgaggtctttcaatgttccattgttgctccttggtggtggtggatataccataagaaat
gttgcacgctgttggtgttatgagacgggagttgctcttggccaagagcttgaagacaag
atgcctgtcaacgagtactatgaatactttggtccagattacactcttcatgttgcacct
agtaacatggagaacaaaaatacacgataccaactagatgatataagatctaaacttctg
gataatctttcaaaacttcgacatgctcctagtgtccagtttcaagagagagttcctgac
acagaagtacctgagccagatgaagatcaagatgatccagatgaacggcatgatcctgac
tctgatatggaagtggatgatcacaaggctgtggacgagtcagcgaggaggagagtcaag
agagaatttggtgaaaatgagaccaaagtgcaggatggtggcagagttgcatctgaccat
agaggactggaacccatggcagaagacattggttcctcgaagcaagctcctcaggcggat
gccagtgcgatttccgtcgatgagccaagcaatgttaagaatgaacctgagagctcaact
aaattgcaagatcaagcagctgcataccacaagccataa

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