Miscanthus floridulus: 136476234
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Entry
136476234 CDS
T10264
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03020
RNA polymerase
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
136476234
09124 Replication and repair
03420 Nucleotide excision repair
136476234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136476234
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136476234
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136476234
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
136476234
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
136476234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
136476234
NCBI-ProteinID:
XP_066330428
LinkDB
All DBs
Position
1:complement(1788003..1796056)
Genome browser
AA seq
1223 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHHQHGGGHADEDDEMGYGGGDGDEMEEAADGDPEQQEEITQDDA
WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLH
KISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTE
TAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM
STNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLP
YIRADIPIIIIFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYI
GKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRA
EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTVT
SGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH
NSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIP
QAAKIFVNGCWVGIHRNADLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR
PLFIVEGQRLLIKKAHIRALQQRETPDEGWHELVSKGFIEYIDTEEEETTMISMTISDLQ
NASHNPEDAYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN
YQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS
SIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTR
VSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKV
RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQL
IECIMGKVAAQMGREGDATPFTDVTVDNISKALHTCNYQMRGFETMYNGHTGRKLTAMIF
LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFF
LKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL
MAMAIAPRMLTHDMKTGKDQKKR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgacgagtacgaggaggggatggagatgggctacggcgggcatcaccagcac
ggcggcggccatgcggacgaggacgacgagatggggtacggcgggggggacggggacgag
atggaggaggcggcggatggggaccccgagcagcaggaggagatcacgcaggacgacgcc
tgggccgtcatctccgcctacttcgaggagaagggcctcgtgcgccagcagctggactcc
ttcgacgagttcatccagaacaccatgcaggagattgtcgatgagtccgccgacatcgag
atccgccccgagtcgcagcacaaccccggccgccaggccgagtttgccgagactctgcac
aagattagctttggtcaaatttatctcagcaagccaatgatgactgaagccgatggagag
acagctactttatttccaaaatcagcaaggctcaggaacttgacatactctgcaccactg
tatgttgatgtgtcatacagagtaatgaagaaaggacatgactgtgaagaagttacagag
actgcagagtatccaaaagtgtttattgggaaggttccaatcatgttgcgttctagttac
tgcacactgtatcaacaatctgagaaggatctcactgaacttggggagtgtccttatgac
caaggtggttatttcattatcaatggaagcgaaaaggttcttattgcccaggagaagatg
agcaccaaccatgtctatgtttttaagaagaggcagcctaacaaatatgcatatgtggct
gaagtccgttccatggctgagaaccagaacagaccagccagcagcatgtttgtacggatg
ctttcgcgagcaggagcaaaagggggatcatctggtcaatatatccgtgctactctgcct
tatattcgtgcggacattcccattatcattatatttcgagcattaggatttgttgcggac
aaggatatactggagcatatatgttatgacttttctgatacacaaatgatggaattgcta
cgcccctccctggaggaagcttttgtcattcaaaatcaacaggttgctctggactacatt
ggaaaacgtggcgcaacagttggtgtcactcgagaaaagagaattaaatatgcaaaggaa
atacttcaaaaggaaatgttgcctcatgttggtgttggggaattctgtgaaactaagaag
gcatactattttgggtatattattcaccgcctactgatgtgcgctcttggtcgaagagct
gaggatgaccgagatcattatggaaataaaagactagatcttgctggtccactgcttgga
gggctgtttagaatgcttttcaggaagttaacaagggatgtgagatcttatgtgcaaaag
tgtgtagataacggaaaggaagttaatttgcaatttgctatcaaagcaaaaactgttacc
agtggcttgaagtactctcttgctactggaaactggggacaggctaaccaagctggaacc
agagcaggggtttctcaggtgcttaatcgcctgacctatgcttctacactttcacatctc
cggaggctgaactctcccattgggcgtgaaggaaaattggcaaaaccccgccagttgcat
aattcacattggggaatgatgtgtcctgcggaaacaccagaaggacaagcttgtggcttg
gtgaaaaatcttgccttgatggtatatatcactgttggttctgctgcaaatccaattttg
gaatttttggaggagtggggcacagaaaattttgaggagatatcaccagctgtcattcca
caagctgctaaaatttttgtcaatggttgttgggttggaattcataggaacgctgacctg
ttggttaagactcttaggcgtttaagaagacagattgatgtcaacactgaagttggcgtg
gttcgtgatatccgtcttaaagaacttcgactctacacggattatggacgctgcagtcgt
ccattgtttattgttgagggtcagaggctgctcatcaagaaggcgcatatccgagctttg
caacaaagggagactcctgatgaaggctggcatgaattggtctcaaaaggatttatagaa
tacatagatactgaagaagaggagactaccatgatctccatgaccataagtgaccttcaa
aacgcaagtcacaacccagaggatgcttactctggaacttacacacattgtgagattcat
ccttcattgatacttggtgtttgtgcgtcgattattccttttcctgaccacaaccagtca
cctcgtaatacatatcagtctgctatgggaaagcaagccatgggaatttatgtcaccaat
taccagttaaggatggacacgctggcctatgttctatactacccacaaaagcctctagtt
actactcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaatt
gttgctatcgcttgttattctggatataatcaagaagattcagttattatgaatcaatct
tccatagatcgtgggttcttccgatcactatttttccgctcttacagagatgaggaaaag
aagatgggtacacttgtcaaagaggaatttggtcgtccaaatagggaaaatactatggga
atgcgccatgggtcatatgataaactagatgatgatggccttgcaccacctggaacaagg
gtctcgggggaagatgtcattattgggaagacatctcctattccacaggatgacgctcaa
gggcaagcttctagatactcgaagcgtgaccatagtacttctctgcgtcacagtgaaagt
ggcatggtagatcaggttctgttaacaacaaatgcggatggtctaagatttgtcaaggtt
aggatgcgatctgttcgcataccacaaattggagacaagtttagcagtaggcatgggcaa
aaaggaactgttgggatgacttacactcaagaggatatgccatggacaatcgaaggcatc
acgcccgatattattgtgaatccacatgctattccatcccgtatgactattgggcagctg
attgagtgtattatgggtaaagttgcggcccagatggggagggaaggcgatgccactcca
ttcaccgatgtgactgtggataacatcagcaaagctcttcatacatgtaattatcaaatg
cgtggatttgagaccatgtacaatggtcacactggaagaaaactgactgcaatgattttc
ctgggtcccacgtattaccaaagactcaagcacatggtggatgacaagatacattcgaga
ggacgtggtcctgttcagatactcacccggcaaccagcagaggggcgatctcgtgatggt
ggtctccgctttggagaaatggaaagggactgtatgatcgcgcatggagcagctttcttc
ctgaaggaaaggctgtttgaccagagtgacgcataccgagtccatgtatgcgagaaatgt
ggtctcatcgcaatagctaacctaaagaagaactcgttcgaatgtaggggctgcaagaac
aagactgacattgtccaagtacacataccctatgcttgtaagcttctgttccaggaactt
atggcaatggccattgctcccagaatgcttacccatgatatgaagacggggaaggatcag
aaaaagcgctga
DBGET
integrated database retrieval system
