Miscanthus floridulus: 136476296
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Entry
136476296 CDS
T10264
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136476296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136476296
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136476296
mRNA degradation factors
5'-3' decay
Decapping complex
136476296
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136476296
NCBI-ProteinID:
XP_066330168
LinkDB
All DBs
Position
8:complement(45996174..46002383)
Genome browser
AA seq
798 aa
AA seq
DB search
MESGGTKFDASQYAFFGNNAVEEVELGGLDDDDGGGDAAFVEHEDEENPLYGRDNMLEEG
VGSFTDIDDLAGTFSKLTRIVNEPKQPGLVSHRGSISRQSSNAEWAQESGPSYWPTQPVL
DTDHGLDKKNWWSQQPHSVNFIDSRLQRTSSSPQQDAQYNPVEPILGAKPSPLHRTSSYP
QQEPQYSNTEPIPVPRSSFISYPPSGAASHSSPSQPHHVSMPSPPTAFQLPMSSAQNDLP
LPQFHHGGTPPGPPFGRQNHVLNSGSMHGNGPRFMPGLMPHQLQRPNGLMPPQMQPPGQH
GMLPMQQSSPQFSQLHAQMIGPHHSPPQSMQIFGPQHPSQVMSRFDANFAMPDFSDPRAR
SMLQHGRLGQRYPHQGYELNNIRMDNGWPRFRSKYMSTEEIENIARMQQAATHINDPYID
DYYHQACLAKKSAGAQLKHHFCPTLIRDPSSRARSKDEPHAYLQVDALGRLPFSSIRRPR
PLLDVEQASAPSDNAEKSVSKPLDQEPMLAARITIEDGLCLLLDVDDIDRLLQFSQQQDG
GLQLRNRRQGLLEQLAESLQLVDPLAPNKNSPLSPYDDLVFLRIVTLPKGRKLLSRYLEL
VTSGSELARIACMAVFRHLRSIFGNMPSDISAAETMTRLARAVSTRIVRMELSDLSACLA
AIVCSSLQPPLRPLGSPAGDWASVIIKSVLDRATVLLTDQHVASNYSMQNRALWQASFDA
FFGLLTQYCMSKFDSVVHTAQLQPAAAAVITREMPVELLRASLPHTNEDQRKQLLIFAQR
TVPVGTHSSHGSGSGPMT
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaggcggtaccaaatttgatgcatcacagtatgctttcttcggcaacaatgcc
gtggaggaggttgagctaggtggattggatgatgatgatggtggtggtgatgctgcattt
gttgagcatgaagatgaagaaaaccccctttatgggagggataatatgttggaggagggt
gtaggttcatttactgacattgatgatcttgctggaactttctcgaagctgaccagaata
gtcaatgaaccaaagcaaccaggattagttagtcataggggatctatttctagacaaagt
tctaatgcagagtgggcgcaagagtctggaccttcatattggcctacacagcctgtattg
gacactgatcacgggttggataagaagaactggtggtcccaacaaccccattcagtcaac
ttcattgactctagactgcagagaacatcgtcgtccccacagcaagatgctcagtacaat
cctgttgaacctattcttggagcaaagccatctcctttacacagaacatcatcgtaccca
caacaagagcctcagtacagtaatactgaaccaattcctgtgcctaggtcatctttcatt
tcgtacccaccatctggtgcagcatctcattcttcacctagtcaaccacatcatgtgagc
atgccatctcctcccactgcattccagttgcctatgtcttctgcacaaaatgatctaccc
cttcctcagttccatcatggaggtacccctccaggacctccatttggtagacagaatcat
gttttaaatagcggatcaatgcatgggaacggtcctaggtttatgccaggtttgatgcct
catcaattgcaacgtcccaatggactgatgccacctcaaatgcagccacctggtcaacat
ggaatgctgccaatgcaacagtcctcaccacagttctcacaactacatgcacagatgatt
ggtccccatcattccccaccacaaagcatgcagatatttggtcctcagcatccttcacaa
gtgatgagtagatttgatgcaaactttgctatgcctgactttagtgatccaagagcaaga
tcaatgttgcaacatggaaggctgggacagcgatatcctcaccaaggttatgagctcaat
aatattaggatggataatggatggccacggttcagatccaagtacatgtctactgaagaa
atcgagaacattgcaaggatgcagcaagctgccacacacatcaatgacccatatattgat
gattactaccatcaagcttgtttagcaaaaaaatcagcaggcgctcaactaaagcaccac
ttttgtccaaccttgattagagatccatcttcgcgtgcacgcagtaaggatgagccacat
gcgtatctacaggttgatgctcttgggaggcttccattttcttcgatccgtaggcctcgt
ccgcttcttgatgttgaacaagcctctgcaccaagtgataatgctgaaaaatctgtgtca
aagcctcttgaccaagaacccatgcttgctgctaggatcacaattgaagacggactttgc
ctactgcttgatgttgatgatattgatcgtctgctgcaatttagccagcagcaagatggt
ggtttgcaactgagaaacagaagacagggactcctcgagcagcttgcagaatcactgcag
ttagttgatccccttgcaccaaataagaattcacctctgtctccatatgatgatttggtg
tttcttcgcatagtcactctaccaaagggccggaaactactttcccgttaccttgaactt
gtgacatcaggcagtgagcttgcaaggatagcttgcatggcagtcttccggcatctaaga
tccatatttggaaatatgccctctgatatcagtgcagcggagacaatgactagacttgca
agagctgtatccacacgtattgttcggatggagttgagtgatctcagtgcttgccttgct
gctattgtctgttcatcattgcaaccacctcttcgaccccttggatccccagcaggtgat
tgggcttctgtcatcataaagtctgtactggacagagcaacagttctactcactgatcag
cacgtggcttctaactacagtatgcagaatcgagctctatggcaggcatcatttgacgcc
tttttcgggcttcttacacagtactgcatgagtaagtttgatagtgtggttcatactgcc
caattgcaacctgctgcggcagcagttataaccagggaaatgccagtagagcttctgcgt
gccagcctcccccataccaatgaggatcaacggaagcaattgctcatttttgctcaacgc
actgtgcctgttggcacccatagttctcatgggtctggtagtggacccatgacataa
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