Miscanthus floridulus: 136476480
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Entry
136476480 CDS
T10264
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136476480
09124 Replication and repair
03420 Nucleotide excision repair
136476480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136476480
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136476480
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136476480
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136476480
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
136476480
NCBI-ProteinID:
XP_066330433
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Position
8:59772213..59786203
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AA seq
600 aa
AA seq
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MGSMTIGAKYKTTIKDPGTAGILRMNDDRFTFTPNDPRSAMKFNVDFRTIKGHKFNKVEG
NKAALLNLSKEDKAGGYIFEFDNVGNRDLCRDFVARVLGKHQGIVPPRPTVTPENSVASA
ALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEANKRSKQR
PGFKNALVDIKPTTDGRTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMSETRFWEK
YCRAEYLVRTKNTAAATAEAAGDEELAIFLKNDDILAKESKMKIKRVDPTLDMEADTGDD
YIHLPDHGIHRYGNKETVDADSDLARRTLSQDLNRHAAVVLEGRSLDVELTDPKTSAEAL
VRSKKEPPSTSIVDDANHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQANA
LRSLGGSNARRKARTCSLSTEEAFHHLMDQMSSIKVNKLNCPIIQSDMALKVLNELNEGI
SLSRRLNLKNPQEGLLGQLPQHTRDELMDHWMAIQELLRHFWSSYPITSAVLYNKVQRVK
EAMTQIYQKLQLIKESAQPDVRHEISRLVKPMTQALDAAFNHDLEQKQKSSKTGNRHNGF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatgacgatcggcgccaagtacaagaccacgatcaaggaccccggcaccgcg
ggcatcctccgcatgaacgatgataggttcaccttcacccctaatgatccacggtcggca
atgaagttcaatgttgatttccgaaccatcaaaggtcacaagttcaacaaagtagagggt
aacaaagcagcattattgaacctttcaaaagaagacaaggctggaggctacatatttgag
tttgacaatgttggtaaccgcgacctgtgtcgagactttgtagctagggttttaggcaaa
catcaagggatagtgcctcctagaccaactgtgactcctgaaaactcagttgcttctgct
gctctggaacaactcagtgctgctgaagtggagagacgggtgaaactgttgcgagaagac
agcgaattgcagaaattacataagaagtttgttcttggaaatattttgcaagaatctgaa
ttttgggcaacaagaaagaatttacttgatgatgaagcaaataaaagatcaaaacaaagg
ccaggtttcaagaatgcactagtagatattaagccaacaactgatggtcggacaaacaaa
gttactttccagatcacacctgagatgatacatcagatttttgcagaaaagcctgctgtc
cgtagagcatatttagattttgttccaaaaaagatgtcagaaacccgattttgggaaaaa
tactgtagagctgagtatctagttagaacaaaaaacactgcagcagcaacagctgaggct
gctggagatgaggaattggctatcttcctgaagaatgatgatatactggccaaggagtca
aagatgaagataaaacgagtcgatccaacattagacatggaggcagacactggagatgat
tacattcatcttccggaccatgggattcaccgttatggtaacaaagagacagtcgatgct
gacagtgacttggcgaggaggacgctgtctcaggacctgaaccgtcatgcagctgttgtt
cttgaagggagatctcttgatgttgagttgactgatccaaagacttcagctgaagccctt
gtaaggtccaagaaagaaccaccttccacttctattgttgatgatgctaatcatgagaga
ctagtgaaggtggctagaatgacagagatagaggatctgcaagctccacgaagccttccg
tatgcaccactttgtataaaggatcctagagaatattttgattcccagcaagcaaatgct
ctgagatctctaggtggcagcaatgccagaagaaaagctcgtacttgcagcttgagcact
gaagaagcattccatcatttaatggaccaaatgtcttctattaaagttaataagcttaac
tgtccgattattcagtctgatatggctcttaaggttcttaatgaattgaacgaagggatt
tctctttcaaggagacttaacctcaagaatcctcaagaaggtctccttggtcagctgcct
caacatacacgggatgagcttatggatcattggatggctatccaggaattgctacggcat
ttttggtcatcgtatccaataacaagtgcagtcctttataacaaggttcaaagagttaaa
gaagctatgacacagatatatcaaaagttgcagcttataaaggaatcagcacagcctgat
gtaagacatgaaatatctcggctagtaaagcccatgactcaggccttggatgccgccttc
aaccacgatttggaacaaaagcagaagtcatccaagaccgggaacaggcacaacgggttt
tga
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