Miscanthus floridulus: 136476486
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Entry
136476486 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03020
RNA polymerase
mflo03420
Nucleotide excision repair
Brite
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136476486
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
136476486
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
136476486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136476486
NCBI-ProteinID:
XP_066330438
LinkDB
All DBs
Position
8:complement(60099349..60107968)
Genome browser
AA seq
1857 aa
AA seq
DB search
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPVKKRGGCGAQQPNITVD
GMKMVAEFKAPKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFARP
DWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIITE
FAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART
VITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRE
DGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF
RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL
LGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINL
IRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAAR
KFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMESINKTISDAKDAVKELIKKAHEKQLE
AEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA
CVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG
LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEFQKL
DSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQL
GTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPG
DDPLSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGE
MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP
EVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDID
PDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRITN
DEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKAA
NEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHL
RGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPY
HEGMMSPSYLLSPNIRASPINADASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFTP
EKGYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSPSY
SPTSRSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYGPTSPSYSPTSPAYSPTSPGYSPTSPSYS
PTSPSYSPTSPSYNPSSAKYSPSHAYSPSSPRMTPYSQTSPSYSPTSPTYSPTSPSYSQP
SPSYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQGNDKDDESTR
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtccagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcggtggttcaaatagaacacgcagag
accatggagaggggaaaaccgaagcctggtgggcttagtgaccctcgattggggactatt
gaccggaaaattaagtgcgagacatgcatggcagggatggcagagtgcccaggccacttt
ggacaccttgagcttgccaagccgatgttccacattggattcattaagactgtgctctct
atcatgcgctgcgtctgctttaactgctccaagatcctcgctgatgaggatgaaaccaaa
tttaagcaggctctaaaaatcaggaatccaaagaatagattgaagagaatatatgatgct
tgcaagagcaaaaaagtctgtgcaggtggcgatgaccttgatgttcaggagcaggatact
gacgagcctgttaagaaaagaggtggctgtggtgctcagcagcccaatattacagtcgat
ggtatgaagatggttgcagagtttaaagctccaaagaagaaaaatgatgatcaggatcaa
ctccctgagccagtggaacgcaagcaaatcctctcagccgagagggtccttaatgttctg
aagcgtataagtgatgaggactgtcttctgttgggcctgaatcccaaatttgcccgtcct
gattggatgatacttcaagtgcttccagtccctccaccccctgttagaccatctgtcatg
atggacacttcttccagaagtgaggatgatttgactcatcaattagctatgattatacgg
cataatgagaacttgaggaagcaagagaggaatggcgctccagctcacattataacagag
tttgctcagttgttgcaatttcatattgcaacatacttcgataatgatcttcctggccaa
cccagggccacacagcgttctggaaggcctattaaatcaatttgcagcaggctgaaagct
aaagaaggccggattagagggaacttgatgggcaagcgtgttgatttctcggccagaact
gtgataacaccggatccaaacataaacattgatgagttgggagtaccatggagtattgct
ttgaacctgacatatcctgaaactgttactccatataatattgagaggttgaaggaactt
gtcgaatatgggcctcaccctcccccagggaagaccggtgcaaagtacattatcagggaa
gatggtcagaggcttgatcttcgatatgtgaagaaaagcagcgaccagcatctggagctt
ggttacaaggtggagaggcatctcaatgatggggattttgttcttttcaaccggcaacca
agtcttcataaaatgtctatcatggggcatcgcatcaaaattatgccctactcaactttc
cggttgaacttgtctgtcacttcaccatacaatgctgactttgacggtgatgagatgaat
atgcatgtcccccagtcatttgagaccagggcagaagttctggagttaatgatggtgcca
aaatgcattgtctctccacaatcaaataggcctgtcatgggcattgtccaagacacactg
cttggttgtcgcaaaattactaaaagggacactctaattgaaaaggatgtatttatgaac
atcttgatgtggtggcaagacttcgatggaaagattcctgcacctgccattttgaaacct
aggcctatttggactgggaaacaagtttttaacttaattatacccaagcaaataaattta
atacggttttcagcatggcattcggaagaagaaaagggatttattactcctggtgatact
atggtcaggattgagaagggagagcttctgtctggtacactttgcaagaagagtcttgga
acaggctctggaagtcttatccatgtcatttgggaagaggttggtccagatgcagccagg
aagttcttaggacatacgcagtggcttgtaaactactggcttcttcaaaatggtttcagt
attggaattggggataccattgcagatgctgccaccatggaatcaattaataaaacaatt
tctgatgctaaggatgctgtgaaggagcttattaaaaaagcacatgagaagcagttggaa
gctgagccaggacgcaccatgatggaatcatttgaaaacagagtgaaccaggttcttaac
aaagctcgtgatgatgctgggagcagtgctcagaagagcttgtctgaaagcaacaatttg
aaggctatggtcactgcaggctcaaaaggaagtttcattaacatttcacaaatgactgct
tgtgtgggacagcagaatgttgagggcaagcggatcccttttggtttcattgatcggaca
ttgccacatttcacaaaagatgactatggtcctgaaagtcgtggatttgtggaaaattct
tacctccgaggtctgacaccacaagaatttttctttcatgctatgggtggtagagaaggt
cttatagatactgctgtgaagacctctgagactgggtatatccagaggagacttgtgaaa
gctatggaggacatcatggtgaaatatgatggtactgtaagaaattctctgggagatgtc
attcagttcttgtatggagaagatggcatggatgctgtttggattgagtttcaaaaattg
gactcattgaagatgaagaagcctgagttcgataatttattccgttatgagctggatgat
gagaactggagacctaactacatgctacctgaacatgttgacgatttgaagaccatacgt
gaattcagaaatgtgtttgaggcagaggttcaaaagctagaagctgatcggtaccagctt
gggactgagatcgccacaactggtgacaattcgtggcctatgcctgtgaacctcaagcgg
ctcatctggaatgctcagaagacattcaggattgattttagaagaccttctgacatgcac
ccgatggaaattgtggaagcggtagataaactgcaagaaagacttaaggttgtacctggt
gatgatcctttgagcattgaggctcagaagaatgcaaccttgttctttaatatcctgctt
cgtagcacgtttgctagcaagagggtcttgaaggaatacaggcttacaaaggaagctttt
gaatgggttatcggtgagattgaatcgaggtttcttcagtctttggtggcccctggtgag
atgattggatgtgtggctgcacaatcaattggagaaccagcaacacagatgaccctgaat
accttccattatgctggtgtcagtgccaagaatgtcacccttggagttcccaggttgagg
gagatcattaatgttgccaagaagataaagactccatctttgtctgtttacctgaagcct
gaggtgaaccagaagaaagaattggctaagaatgtccagtgtgctttggagtacaccaca
ctgcgtagtgttacccacgccacagagatatggtatgatcctgatcctctaggaaccatc
attgaagaggacgcagagtttgttcagtcctattacgaaatgcctgatgaggatattgac
ccggataaaatttctccttggctgctgcgtattgagcttaaccgtgagatgatggttgat
aagaagttgagcatggctgatattgctgacaagattaaccgtgagtttgatgatgactta
tcatgcatttttaatgatgataatgcggataagctcatcctccgtatccgcatcacaaat
gatgaagctccaaaaggagaaatacaagatgagtctgctgaggatgatgtcttcctaaaa
aagatagagggtaatatgttgacagagatggcgcttcgaggcattccagatatcaacaaa
gtgttcatcaaagaagggaaggtcaatactttttatcaagacgaaggtttcaaagcagct
aatgaatggatgcttgatacagaaggtgtgaatctcttagctgtcatgtgtcatgaggat
gttgatgctacaaggacaacaagtaaccatctgattgaagtgattgaggtacttggaatt
gaggctgttcgtcgttctctcttggatgagcttcgggtggtgatatctttcgatggatcc
tatgtgaactacaggcatctggccattctttgtgatacaatgacatacagaggtcactta
atggcgattacaaggcacggtatcaaccgcaatgacactgggcctcttatgagatgttcc
tttgaagagactgttgacatcttacttgatgctgctgtatatgctgaatctgaccacctg
agaggtgtcactgaaaacataatgcttggtcagcttgctcctattggtactggaggctgt
gcactatatcttaatgaccagatgttgcagcaggcaattgaacttcaacttccaagctat
gtggaaggcctagacttcggcatgacaccagcacgatcacccatctccgggacaccttac
catgaaggaatgatgtccccaagttatctgctgagtccaaatatcagggcttcccccatt
aatgcagatgcttcgttctcaccatatgttgggcacatggcattctcaccattcccttca
ccaggtggttactctccatcgtcagggggatacagtccatcttctccagttttcacccca
gagaaaggatatagccctctttctccatcatacagccctgcatcgccaagctatagtccc
acctcaccatcatatacacctggctctcccacctacagtcccacaagcccgaattactcc
ccaacaagtccgacttactcgcctaccagtccatcatactcacccacatctccgagttac
agcccaacatctcgtagctacagtcctacatcaccaagctacagccctacatctcctagc
tatagtcctacatcaccaagctacagccccacctcaccagtttatagtccaacctcacca
gcatatagccctacatctcccgcatacagccccacatcaccatcttacagtccaacttcg
ccatcttatagccctacatcaccatcatacagcccaacatccccgtcatacagccctacc
tccccctcatacagtcctacttccccctcatatggccctacctccccctcgtacagcccg
acatcacctgcatacagcccaacttcgccaggatacagcccaacatcaccaagctacagt
cctacttctccgagctacagtcctacttctccgagctacaatccttcatcagccaagtac
agcccttcgcacgcatactctccaagcagccccaggatgactccatatagtcagacttct
ccaagctacagtccaacgtcaccgacatactctcctacatcaccatcatattcacaacca
agtccatcgtacagcccaacaagcccgttcaacacctctggaggacctagcccggattat
agcccaacctctccaaattacagccctagtggaagctactccccaactgcaccgggctac
tccccatcgtccacaggccaaggtaatgacaaggatgatgagagcactcgttga
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integrated database retrieval system
