Miscanthus floridulus: 136477256
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Entry
136477256 CDS
T10264
Name
(RefSeq) pre-mRNA-processing factor 39-2-like
KO
K13217
pre-mRNA-processing factor 39
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136477256
Spliceosome [BR:
mflo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
136477256
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
136477256
NCBI-ProteinID:
XP_066331468
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All DBs
Position
8:125204342..125227143
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AA seq
1165 aa
AA seq
DB search
MEPEDDAMALASDAAAPELPSSQLDFFKTRVRLLCDSNAGDFDAWVSLINAAEGKSADDI
EVISLVYHSFLLEFPLCYGYWIKYAAHKARLCTTSYVVDVYEQAVHAVPHSVDIWVSYCG
FGISAFEEPAHIRSLFERALSLVGKDYLCYHLWDMYIEFETSQKQLIQLATILINTLKFP
TKKLHMYYESFRKFVTLLEQEVTSCVAEILSEETHASEMIGAEDSELDISTIIADLFDQK
GGHLSPEALKHYLSAGERLYKRSSKIYKEICYFEASIKRPFFHVKLLDDDQLENWHQYLD
FVEKYGDFDWAVKLYERCLIPCANYSEFWIRYSEYVDAKGGREIANHALGRASSCFVKEV
PTFCMYYALFKEQIGDALAARSLFTKARSYFSSGFYANINRLANMEKRMGNTKAASEIYQ
TAIEDAMQKKNIELLPDLYSNFAQFIYAASHSIIEAKQVFVKGINRAPCKPLIKGFIQFM
STHGGPKDIPLLDSVISNAVTPGSDVSTALSTEDREDISLLFLEFVDLYGGIKELRKAWA
RHSKLFPHSTGNISRHYSTMGNSLQETNKRRKTEPLMVARDHSLAPKADDFSLKVDKESE
PQVDKDIVDSGKGHRDAGEQKALEIVNSHKETIRAAQECTDMVHSEHILDKNGMQKQMNS
HAKEETNQDLILHEQNDEKTNSCDVEAPVAESGDSDSPSKAIASSENINSQGKVIVESAS
SHLETVCSKYDSLSGSNMHKEGNSAGPARMSPELEERQHVEVQVKVDTEHDLSVSNANLE
RSFDGPNPTECDKEISAIGHGSQDHIQSSQSHELSACAKPLSLDLAKTKSDTVGFQAQLR
HQVGNAQTHQSNNLSQNMQQQELTMAQNVQTSAQIHDQLFAQSNHGSQQYLQVMQGYASQ
MGQYYQQQLYYLQAQHNQQMQSLQQQQLPTEHLQQNFMQQVQQLNQQMVLWQQQVQQQQQ
VVLQQALPVQQLPDEKQGQCPSRDTKHDQNKQQQQAPQMDQQSQQLQQQQFLYLQQQQQQ
QQQMYLIQQQQMYQQQQAQQQQLFQQQLMQQQQYVLQMPQQQQDSVQQQQQQQQLFQQQQ
QQMMLLQRQQQQLMQQQIQQYLQQQQNQQGPKDQAYKSNPQDGRNRQMEHGQLSEASQSD
GSKLRSGEQSELSYPSTPQSQRSNH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaggacgatgccatggccctcgcgtcggacgccgcggcgcctgagctccca
tcgtcgcagctcgattttttcaagaccagagttcgattgttatgtgatagcaacgctgga
gattttgatgcttgggtatcattaataaatgctgcagagggaaaatcagcagatgacata
gaagttataagcttggtataccatagcttcttgttggaatttcctttgtgctatggttac
tggatcaagtatgcagctcacaaggcacgactatgcacaaccagctatgtagtggatgtt
tatgaacaagctgtccatgctgtacctcattctgtcgatatttgggtcagttactgtggg
tttggtatatctgcatttgaagaacctgctcatatcagaagtttattcgagagggcttta
tctcttgttggaaaggactatttgtgttatcacctgtgggacatgtatatagaatttgaa
acctctcagaagcagctgattcagcttgccaccattttaatcaacacactgaaatttccc
acaaagaagttgcacatgtattatgaaagttttagaaagtttgtaacattattggaacaa
gaggtgacaagttgcgttgctgaaattttatcagaagaaacacatgcttctgaaatgata
ggcgctgaagattctgaattggatatatcaactattattgctgacttatttgaccaaaaa
ggtgggcatcttagtcctgaagcattgaagcattacttatctgctggggagaggctctac
aaaaggtccagcaagatttacaaagaaatctgttactttgaggcatccataaaaaggcct
ttttttcatgtcaagctacttgatgatgatcagcttgaaaactggcaccagtatcttgac
tttgtggagaagtatggggattttgactgggctgtaaaactttatgagaggtgcttgatc
ccttgtgctaattattcggagttttggatccgctactcagagtatgtcgatgctaaaggc
ggccgagaaattgcaaaccatgctctgggtcgagcatcatcatgttttgtaaaggaagtc
ccaactttctgcatgtattatgcgttgtttaaagagcaaattggtgatgcactggctgcg
cgctctctttttactaaagcaagaagttacttcagttcagggttttatgcaaatattaat
aggctggccaacatggaaaaacgaatgggaaatactaaagcagcttctgagatatatcag
acagcaattgaggatgcaatgcagaagaagaatatagagttgcttcctgacctgtacagc
aattttgctcagttcatatatgcagcaagtcatagcattattgaggctaaacaagtcttt
gtcaagggaataaatcgtgcaccctgtaaaccgttgattaagggattcatacagttcatg
agtacacatggagggcctaaagacatacctcttcttgattctgttatttctaatgccgtg
actccaggatctgatgtatctacagccttaagcacagaggatcgtgaagatatctcattg
ttgtttttggagtttgttgacctctatgggggcattaaagaactcagaaaggcgtgggct
cggcatagtaaactgtttcctcacagcactgggaacatttcacgtcattattctactatg
ggcaatagccttcaagagactaacaagaggagaaaaacagaacctttgatggttgctcgt
gatcattccttagcacccaaagctgatgatttttctcttaaagttgataaggagagtgaa
ccacaagtggacaaggacattgtggattcaggaaaaggacatagggatgcaggagagcag
aaagctttagagattgtcaattcacataaagagaccatcagggcagctcaggaatgcacc
gacatggttcacagtgaacatatcctggacaaaaatggaatgcagaagcaaatgaattca
catgccaaagaagagactaatcaagatctaatcttgcatgaacaaaatgatgagaaaaca
aattcttgtgacgtggaggctcctgtagctgagtcaggtgactctgattctccttccaaa
gcaatcgctagctctgagaacatcaattctcagggcaaggtcattgtggaatctgcaagc
agccatctagaaacagtatgctccaaatatgactcactgtctggatcaaacatgcacaaa
gaaggaaattctgctggtccagctcgaatgtctccagaactggaggaaaggcaacatgtg
gaggttcaggtaaaagtcgacacagagcatgatttgtctgtcagtaatgcaaacctagag
aggtcttttgatggtccaaatccaactgaatgtgacaaggaaatctctgctattggtcat
gggagtcaagaccatattcaatcttcgcagtcacatgaactctcggcctgtgcaaaacct
ttgagcttggacttagcgaaaacaaaatcggatactgtcggttttcaagctcaacttcga
caccaggtggggaatgctcaaacacatcaatctaataacctttcacaaaacatgcaacag
caagagcttacaatggctcagaatgttcaaacatccgcacagattcatgatcaattgttt
gcacagtctaatcacggaagccaacagtatctccaagtgatgcaagggtatgcatcacaa
atggggcaatattaccagcaacaactgtattacctgcaggctcagcacaatcaacagatg
cagagtcttcaacagcaacagcttccaactgagcatcttcagcaaaattttatgcagcaa
gtacaacaactgaaccagcaaatggtactttggcagcaacaagtgcagcagcagcaacaa
gtagtactacaacaggcactgccagtccagcaacttcctgatgaaaaacagggtcagtgt
ccttccagggataccaaacacgaccaaaataaacagcagcaacaagcacctcaaatggat
caacaaagccagcagttgcagcaacaacagtttctttatctccagcaacagcagcagcag
caacaacaaatgtatcttatacagcaacagcagatgtatcaacaacagcaagctcagcaa
cagcagctctttcagcagcagttaatgcaacaacaacagtatgtactgcagatgccacag
caacagcaagactcagttcagcagcaacagcaacagcagcaactgtttcagcaacaacag
cagcagatgatgcttcttcagcgacagcagcaacagcttatgcaacaacagatccaacag
tacttgcaacagcaacaaaaccaacaagggcccaaggatcaggcttacaagtcaaatcct
caggatggaaggaacaggcaaatggagcatgggcaactgtctgaagcttcacagagtgat
ggctccaaactgcgcagcggtgaacaatctgaattatcctacccgtcaactcctcagtca
caacgctcaaatcactga
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