Miscanthus floridulus: 136477489
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Entry
136477489 CDS
T10264
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03440
Homologous recombination
mflo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136477489
03450 Non-homologous end-joining
136477489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mflo03032
]
136477489
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136477489
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
136477489
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
136477489
BRCA1-C complex
136477489
NHEJ (non-homologous end-joining)
MRX complex
136477489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
136477489
NCBI-ProteinID:
XP_066331762
LinkDB
All DBs
Position
8:complement(166437042..166458639)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLVKGIRSFDPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVSGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQMQEIKTFRLKLENLQTVKDQAHKLRENIAQDQEKSDASKS
QMEQLKEKIRGIESEILQMETRLNELRRLQEQINTKATERSTLFTLQHQQYAALSEENED
TDEELMEWQTKFEERIALLETKISKLGRDMEDEASNSSRLSKQYSELTHDIGKLQAEADA
HQNMKDERDMDIKNIFTKHNLGPVPESPFTNDVAMELTNMIKARLSNLENDLQEKKKSNE
DQLDVLWKRYLKINARCSEVDGQIQSKTESMSGILRRRKDKEKERDAAEVELSKLNLPRI
DERERYMQIEVERKTLALGERDYDSIINQKRTEMFSLDQKIKVLQREKDTINRNADERVK
LGLKKDALESSKDKLNEIVNEHKDKIRRVLRGRLPSEKDMKKEINQAFWPVDKEYNELKS
KSQEAEQELKLTQSKVTDAREQLTKLRREMDAKRRFLESKLQSILQISANVDMFPKVLQD
AMNKRDEQKRLENFANGMREMLAPFEHLARQNHVCPCCERAFTPDEEDEFVKKQRMQNSS
TAERSKALAMKSSDAEAIFQQLDKLRTIYDAYMKLVEETIPLAEKNLNQHLADESQKAQT
FDDLLGVLAQVKMDRDAVEALLQPTDTIDRHVREIQQLVQEVEDLEYTLDSSGQGVKSLE
EIQLELNSLQRTRDTLSIEVDDLRDQHRILNEDLSSAQVRWHTAREVKVKASNILERFQK
SEEEFVVLAEEKEQLIVEKKLLEESLDPLSKERESLLQEYNALKQRFDEEYHQLAERKRD
FQQELDALGRLNMKIKGYLDSKKIERLKELQGKHALCYSQLQNCKAKHKDISAELNKNKE
LQQGQGQLKRNIDDNLNYRKTKADVERLTCDIESLEERVLSIGSSSAIEADLKRHSQEKE
RLNSEFNRCQGTLSVYQSNISKHKQELKQTQYKDIEKRYTNQLLQLKTTEMANKDLDRYY
TALDKALMRFHSMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEARKGQENFQLIVITHDERFAHLIGQRQLAEKYYRVSKDENQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtggacaagatgctggtcaaggggattcggagcttcgatccggacaataag
aacgtcatcaccttcttcaagccgctcaccctcatagtcggccccaacggtgctggcaag
accacgatcatcgagtgcctgaagctttcttgcaccggcgagctgccccccaactcccgc
tctggccacaccttcgtccacgaccccaaggtgtctggtgagacggaaacaaaaggacag
attaagctgcggtttaagactgcagcaggaaaggatgtggtgtgcatccggtccttccag
cttacccaaaaggcatcaaagatggagtttaaggcaattgaaagcgtcctccagactata
aatccacacacaggggagaaggtctgcctcagctacagatgtgcggacatggatagagag
attcctgccttaatgggtgtttctaaggctgtactggagaatgttatatttgttcaccaa
gatgaatccaattggccattgcaggacccgtcaacacttaagaagaagtttgatgacatc
ttctctgccacccgctataccaaagctcttgaagtcataaagaaacttcacaaggatcaa
atgcaagagatcaagacttttaggttaaagctagagaaccttcagactgtaaaagaccaa
gcacataagctgcgtgaaaatattgctcaagatcaagaaaagtcagatgcctcaaaatct
cagatggagcaactgaaggaaaagatccgtggtatcgagagcgaaatcctgcaaatggaa
acacgtttgaatgaattgagaagacttcaggagcaaattaacaccaaggcaacggagaga
agtacattatttacgcttcagcatcaacagtatgctgcactgtctgaggaaaatgaagat
actgatgaggaactaatggaatggcaaacaaaatttgaagaaaggatcgcgttactagaa
acaaaaatcagtaaacttggaagagatatggaagatgaagcatcaaatagctcccgtctg
tccaaacaatattctgaattaacacatgatataggaaagctccaggcagaagctgatgct
caccagaatatgaaggatgaacgagatatggacataaaaaatatattcactaaacataat
cttgggccggttcctgaatctccctttacgaatgatgttgctatggaacttacaaacatg
attaaagcgagactctcaaatcttgagaatgatttgcaggagaagaagaaatccaatgaa
gatcagttagatgttttgtggaaacgctatcttaaaataaatgctcggtgctctgaagtt
gatggtcagatacaatctaagaccgaatccatgtcaggcattttaagacggagaaaagat
aaagagaaagaacgtgatgctgcagaagtggagctttcaaaacttaatctgccccgtatt
gatgagagggagagatatatgcaaattgaagttgagaggaagacacttgcccttggagaa
agagactatgattcaattataaatcagaaacgaacagaaatgtttagtttggatcagaaa
ataaaagtacttcagcgggagaaagatacaataaatagaaatgctgatgaaagagtaaaa
ctgggtttgaagaaggatgcattggaaagcagcaaggataagctcaatgagatagttaat
gagcataaggacaaaatcagaagggttcttagggggaggcttccttctgagaaggatatg
aagaaggagatcaatcaagccttttggcctgtggacaaggaatacaatgagttaaaatca
aaatcccaggaagcagagcaagaacttaaattgactcagagcaaagtaactgatgctaga
gaacaattgacaaaacttcgaagagagatggatgcaaagagaagattcctggaatcgaaa
cttcaatctattttacagatatctgctaacgttgacatgtttcccaaggttctgcaagat
gccatgaacaaaagagatgagcagaaaagattagagaattttgcaaatggaatgcgggaa
atgcttgcaccttttgaacatttggctcgtcagaatcatgtatgtccatgctgtgaacgt
gcttttacacccgatgaggaggatgagtttgtgaagaaacaaaggatgcaaaactcaagt
actgcagagagatctaaagctctggcaatgaaatcatcagatgctgaagccatttttcag
caattggataaacttcgtactatctatgatgcttacatgaagctggtagaagaaaccata
cctctagcagagaaaaatttgaatcaacatttggcggatgaaagtcagaaggcgcagaca
tttgatgatcttttgggtgttcttgcccaagttaaaatggacagggatgcagtggaagcc
ctgttacaacccactgatactattgacaggcatgtacgtgaaatacaacagctagtccaa
gaagtagaagatcttgaatatacacttgattctagtggccaaggtgtcaagtctttggag
gaaattcaactggagctgaactctctgcagagaacaagggacacattgagtatcgaagtg
gatgatcttagggatcaacatagaattctaaatgaagatctgtcaagtgctcaggtgaga
tggcacactgctcgggaagtgaaggtgaaagcttcaaacatattggaaagattccaaaaa
tctgaagaggaatttgtggttctagctgaggaaaaagaacagctgatcgtagaaaagaag
cttttagaagagtctcttgatccattgtccaaagagagagagagcttgttgcaagagtat
aatgctttgaagcaaaggttcgatgaagagtatcatcagctggcagaaagaaaaagggac
ttccagcaagaacttgatgcacttggaagactcaatatgaagatcaaagggtacttggat
tccaagaaaatcgaaaggcttaaggaattgcagggaaagcatgctctttgctattctcag
ttgcagaactgcaaggcaaaacacaaagacatatcagctgagttaaacaagaacaaagaa
ctacagcagggccagggccagttgaaaagaaacattgatgacaatctcaactacaggaaa
acaaaggctgacgtggaacgacttacttgtgatatagaatcacttgaagagagggtgctt
tcaataggtagctcgtctgctatagaagctgatctgaagcgtcattctcaagaaaaagag
aggcttaattcagagtttaacaggtgtcaaggaacactttctgtttatcaaagtaatatt
tcaaagcacaaacaagagcttaaacagacacagtacaaggatattgagaagcgatatact
aatcaacttctccaacttaagacaactgaaatggcaaacaaggacttggacagatattat
actgctttagacaaggctcttatgcggttccacagcatgaagatggaggagataaataaa
ataatcaaggaactgtggcagcagacatacagaggccaggatattgattacataagcata
aattctgattctgagggtgctggcactcgatcatacagctaccgtgttgttatgcaaacg
ggtgatgctgagctggaaatgcgagggcgctgcagtgctggtcagaaggttcttgcttct
cttataatcagactagcacttgcagaaactttctgtctgaactgtggcatattggctttg
gatgagccaactacgaatctagatggtccaaatgcggagagccttgctgctgctctgttg
agaataatggaagccaggaaagggcaggagaacttccagttgattgttatcactcatgac
gagagatttgcccatcttattggtcaaaggcagcttgctgagaagtactatcgcgtctcc
aaggatgaaaaccagcacagcataattgaatcccaagagatatttgactga
DBGET
integrated database retrieval system
