KEGG   Miscanthus floridulus: 136477616
Entry
136477616         CDS       T10264                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
mflo  Miscanthus floridulus
Pathway
mflo03030  DNA replication
mflo03410  Base excision repair
mflo03420  Nucleotide excision repair
mflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136477616
   03410 Base excision repair
    136477616
   03420 Nucleotide excision repair
    136477616
   03430 Mismatch repair
    136477616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mflo03032]
    136477616
   03036 Chromosome and associated proteins [BR:mflo03036]
    136477616
   03400 DNA repair and recombination proteins [BR:mflo03400]
    136477616
DNA replication proteins [BR:mflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    136477616
  DNA Replication Termination Factors
   ELG1-RFC complex
    136477616
Chromosome and associated proteins [BR:mflo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    136477616
DNA repair and recombination proteins [BR:mflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     136477616
  Check point factors
   HRAD17(Rad24)-RFC complex
    136477616
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 AAA_22 DUF815 AAA_16 AAA_24 ABC_tran Mg_chelatase RuvB_N RsgA_GTPase AAA_5 AAA_29 AAA_2 nSTAND3 AAA_11 ATPase_2 nSTAND1
Other DBs
NCBI-GeneID: 136477616
NCBI-ProteinID: XP_066331963
LinkDB
Position
1:34286026..34290287
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVARNLRKLVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG
AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVAPPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLINCIPPESILKKLLAE
LLRKLDADLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaaataccggccgaaaaccctagacaaggtcaccgtccacgaccag
gtggcgcgaaacctcaggaagctcgtgtcggagcaggattgcccacacctgctgttctat
gggccgtcggggtctgggaagaaaaccctaatcctcgcgctcatcaagcagatgtttggc
gccggtgcggagaaggttaagctggaaaacaagacatggaaaatcgatactggaacaagg
acacttgagatagaattggcgatgttgtcaagtgctcaccatgtggagatgaaccccagt
gatgctggctttcaggacaggtatgttgtccaggaggtcatcaaagagatggcgaagaac
agaccaattgatgccaaaggcaagagagcatttaaagtccttgtgttaaatgaagttgac
aagctctcacgagaagcccagcattccctccgcagaactatggaaaagtatagctcatca
tgcaggctgatcctatgctgtaacagctcctcaaaagtgacagaggctgtaagatcccgt
tgcttaaatgtgcgagtaaatgcacccagtgaagatcagattgtccaagttctagagttc
attgggaagaaagaaaacctgcatcttccagctggatttgctgctcgtatcgcagcacaa
tcaaaccgtaatcttagacgggcaatactgttttttgagacttgcaaagtgcaacaatac
ccatttacatcaaatcaagtggcgcctcctcttgattgggagcaatatgtgtctgaaata
gcaactgatatactgacagaacaaagccctaaaaggctatttgctgtacgccagaaattc
tatgaattactcatcaattgtatcccacctgaaagtattttgaagaaattgttggcagaa
ttacttaggaagttagatgctgatctgaaacatgaaatctgtcactgggctgcacactat
gagcacaagatgcgccttggatcaaaggccatttttcatctagaagcttttgtggccaag
ttcatgagcatttacaaggagttcctggtggctacatttggttga

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