Miscanthus floridulus: 136477753
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Entry
136477753 CDS
T10264
Name
(RefSeq) regulator of nonsense transcripts UPF2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136477753
mRNA cycle factors
P-body specific factors
136477753
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136477753
NCBI-ProteinID:
XP_066332101
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Position
8:186564708..186578830
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AA seq
1194 aa
AA seq
DB search
MDNAQSENRTDTKQDDDVRQSKQDDEEARLEEYKKIIDQKTSLRRSNLNPERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQSAV
QVCSLLHQRYKDFSPCLIQGLLKVFFPGKSGDDLDADKNSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSAEHLKDREGTQTNLSLLSTFARQVKFFLGLQSHGQEAYDEFFRD
LNVTAEQKKFFKKALNSYYDAVAELLQSEHASLRLMEAENAKVLSAKGELSDENTASYEK
LRKSFDQLLRGVSSLAESLDMQPPVMPDDGNTTRVTTGTDALPSSGKESSALEPIWDDED
TKAFYESLPDLRAFVPAVLLGEVEPKSNEQHAKGREQSSESTTEQDTELHDNVQNSATEH
QLEVKVDDVVKESEDKDKEKGKDGEKEKYKEKDLDKKNEREKEKGRALDGASLDNLQQRL
PGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDV
PSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFS
HHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCK
PPERSARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPWAECQQYLLKCFLKVHK
GKYSQVHLIALLTASLSRYHDDFAVAVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGEL
YSYKHIDSSVVFDTLYLIIVFGHGTPEQDVLDPPEDCFRIRLIITLLQTCGHYFSKGSSK
RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPNMSRYSSIEELVAALVELEENER
SAPVENIENERHSDTESQKRQPRDAGPSVNGESAANGIEENGKDHEVADSESYSDSGSID
GREEEEDILSEDKSNDGSDNEGDDEDDGIPVGSDEDENVEVRQKVMKVDPKEQEDFDREL
KALLQESLESRKSEARSRLPLNMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGSSSK
VRVKVLMKKGHKQQTRQMLIPADSSIVQSMKQQEAAELEEKQSIKRRILEYNEREEEELN
GASQMGNWGQGATNTSSIRSGGRGIWDGSTRGGGRQRHHIAGSGGFYHSYGRRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgctcagagtgagaaccgaactgataccaagcaagatgatgatgtgcgccaa
agcaaacaggatgatgaggaggcccgccttgaagaatataaaaagataattgatcaaaag
acttccctccgccggagcaacctaaaccctgaaaggcctgatgcaaactacctgagaacc
ctggactccagtatcaagcgaaatacaacagttataaagaagttgaagacaataaatgat
gaacagaaggatgggctaatggatgagttaaaaagtgtgaatttgagcaaatttgtcagc
gaagcggtttcttatatttgtgaggccaaacttcgctccgctgatatacaatctgctgtt
caggtttgctcgctccttcatcaaagatacaaggacttctctccttgtcttatacaaggt
ctactgaaggtcttctttcctggaaaatctggagatgatttggatgcagataaaaattcg
agagccatgaagaagagaagcacattgaaacttttgatcgaactgtattttgttggaatt
gtcgaagatgctagcatatttgtaaatattataaaagatcttacatcagcggaacatttg
aaggaccgtgaaggaactcaaacaaacttgtctcttctatctacctttgctcgtcaagtg
aagttttttttagggctacaatctcacggtcaagaagcttatgatgagttttttagggac
ctaaatgttactgctgagcagaagaagttctttaagaaagccttgaactcttactatgat
gctgtagctgaactactacaatcagaacatgcgtctcttcgtctaatggaggcagagaat
gcaaaagttttaagtgccaaaggtgaactaagtgatgagaacacagcttcatatgagaaa
ctcagaaagtcttttgatcagttactacgtggtgtatcctcgttggccgaatctcttgac
atgcagcctccagtgatgccagatgatggaaatacaacaagagttactacaggaaccgat
gccttgccttcttctggaaaagaatcatctgcattggaacctatctgggatgatgaagat
accaaagctttttatgaatctttacctgatctcagagcatttgtgccggctgtattactg
ggagaggttgagccaaagtcgaatgagcagcatgctaagggccgtgagcaatctagtgag
tccactacagaacaagacactgaactacatgacaacgttcaaaattctgccactgaacat
caactagaagttaaagtagatgatgtagtgaaagagagtgaagacaaagataaagagaag
ggaaaggatggagaaaaggaaaaatacaaggagaaggatctggataagaaaaatgaaaga
gagaaggagaaaggaagagccttggatggtgcaagtctggataacctccagcagaggctg
ccgggatgtgtcagtcgtgatctcattgatcaattgacggttgagttttgctacctaaat
tctaaagcaaatcgaaagaaacttgtgcgtgccttattcaatgttaataggacttcactg
gaactgttgccttactattctcgtttggttgcgacactttcaacttgtatgaaagatgtt
cccagtatgcttctgtctatgcttgaagaggagttcaactttttaataaataagaaggat
cagatcaacattgaaacaaaaataaaaaatatacggtttatcggggagttgtgcaagttc
aaaatggctcctccagctcttgtttttagctgtttgaaggcctgccttgatgatttcagt
catcataatattgatgtggcttgcaaccttctcgagacttgtggccgctttttgtatcgc
tcacctgaaactacgattcgcatggctaacatgctggagatactgatgagattgaaaaat
gtcaagaatttggatccacgccacagtacacttgtagaaaacgcctactacctttgtaaa
ccgcccgaaagatctgcacggatatcaaaagttcggccacctttgcatcaatacataaga
aagttgcttttctcagatcttgacaaatcaagtgttgaacatgttttgcgccaactacgc
aagttaccttgggcagaatgtcaacaataccttctgaagtgctttctaaaggttcacaaa
ggaaagtacagccaagttcatctgattgctcttctcactgctagtctcagccgctatcat
gatgactttgctgtcgcagtggtagatgaggttttagaagagataagggttggattggag
ttgaatgactatgggatgcaacaaaggcggcttgcccacatgcggttccttggagagcta
tacagctacaagcatatagattcatcagttgtttttgatacactgtaccttatcattgtg
tttggtcatggaactcctgaacaagatgtgttggatccaccagaagattgcttcagaatc
aggttgatcattacacttctacagacctgtggtcactatttcagtaagggatcttcaaaa
aggaagctcgacaaattcttgctacactttcaaagatacattattagtaaagggccctta
ccactcgacatagagtttgacattcaggatttatttggcgagctacgaccaaacatgtct
cggtattcgtcaattgaggagcttgttgccgcgttagttgagcttgaagaaaatgaacgt
tcagccccagtagaaaatattgaaaatgaaagacactcggataccgaatctcagaaaaga
cagccacgagatgctggcccatctgtgaatggtgaaagcgctgcaaatggaattgaggaa
aatggcaaggatcatgaagtagcagatagtgagagctattcagatagtggcagcattgat
ggacgggaagaagaggaggatatattatctgaggataaatcaaatgatggctcagataat
gaaggcgacgatgaagatgatggcattcctgttggttctgatgaagatgaaaatgtcgag
gttagacagaaagtcatgaaggttgatcctaaggagcaagaagactttgatcgagagctc
aaagcccttcttcaggagagcttggagtcacgtaaatcagaggcccgttcaaggctccct
ttgaatatgatggtaccgatgaatgtccttgagggttcaaaagactcaagggccacagaa
tctgagagtggagaagaaacagtagatgaagagggtggcaatgctgggagtagcagcaag
gtgcgcgttaaggtgctaatgaagaaaggacacaaacaacagacaagacaaatgttaata
cccgctgatagttcaattgtgcaaagcatgaagcagcaagaagctgctgagcttgaggag
aagcagagcatcaagcggaggatcctcgaatacaatgaaagggaggaggaagaactgaat
ggagcatcacaaatggggaactggggtcaaggagctaccaataccagcagtatcagatca
ggtggccggggcatctgggatggttcaacacggggaggtggtcgacaacggcaccacatt
gcgggttctggtggtttctatcacagttacggcaggagaagataa
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