Miscanthus floridulus: 136478470
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Entry
136478470 CDS
T10264
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136478470
09122 Translation
03013 Nucleocytoplasmic transport
136478470
03015 mRNA surveillance pathway
136478470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136478470
03041 Spliceosome [BR:
mflo03041
]
136478470
03009 Ribosome biogenesis [BR:
mflo03009
]
136478470
03012 Translation factors [BR:
mflo03012
]
136478470
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136478470
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136478470
mRNA cycle factors
Stress granule specific factors
136478470
Spliceosome [BR:
mflo03041
]
Complex C
Other components
EJC/TREX
136478470
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
90S particles
Helicases
136478470
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
eIF-4
136478470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
136478470
NCBI-ProteinID:
XP_066333031
LinkDB
All DBs
Position
8:complement(228818960..228822487)
Genome browser
AA seq
407 aa
AA seq
DB search
MAAPTTSRRGPGGARNMDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAI
QQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VMLAIGDHLNIQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTV
SAMHGDMPQQERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccaccacctcccgccgcggccccggcggcgcgcgcaacatggacgacgag
aacctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgaccagatgggc
atcaaggacgaccttctccgcggcatctacggctacggcttcgagaagccctccgccatc
cagcagcgcgccgtcctccccatcatcaacggccgcgacgtcatcgcgcaggcccagtcc
ggtaccggcaagacgtccatgatctccctcaccgtctgccagatcgtcgacaccgccgtg
cgcgaggtgcaggctttgatactctcgcctactagggagcttgcttcccaaacagagaga
gttatgctggctattggcgaccacctcaacatccaagtgcatgcttgcattggtgggaag
agtattggtgaggatatcaggaggctcgagaacggagtgcatgttgtctcaggaactcca
ggcagagtctgtgatatgatcaagaggaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagtagaggctttaaggatcagatttatgatgtc
tacagatatctcccaccagaacttcaggtgtgtttgatttctgcaactcttcctcatgag
atcttggagatgactagcaagttcatgaccgaaccagttaggatccttgtgaagcgtgat
gaactgaccctggagggtatcaaacaattctttgttgctgttgagaaagaggaatggaag
tttgatactctttgtgatctttatgatacactcaccatcacccaagctgttattttctgc
aatactaagagaaaggtggattggcttactgaaaaaatgcgcagcaataacttcacggta
tcagctatgcacggtgacatgccccaacaagaaagggatgccattatgggtgagttcagg
tccggcgcaactcgtgtgctgataactacggatgtttgggctcgaggactggatgttcag
caggtttcacttgtcataaattatgatctcccaaataatcgtgagctttacatccatcgc
attggtcgctctggtcgttttgggcgcaagggtgtggcgatcaatttcgtgcgcaaggat
gacatccgtatactgagagatatagagcagtactacagcacacaaattgatgagatgcca
atgaatgtcgctgatcttatttga
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