Miscanthus floridulus: 136479304
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Entry
136479304 CDS
T10264
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
136479304
Enzymes [BR:
mflo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
136479304
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RskA_C
Motif
Other DBs
NCBI-GeneID:
136479304
NCBI-ProteinID:
XP_066333313
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Position
9:complement(14973449..14979926)
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AA seq
671 aa
AA seq
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MAAAAIVVLLAVGASTVLHLAAAEVPPPDAAQHGVTVSVSQRQVIVDNGVVQVTLSTPQG
HITDVRYNGEQNLLYYTGGANTAGYWDVVWDYPGSGRPGMLNMLDGSELRVVSSSEEKVE
LSFRSNYNPSLPNSVRLNIDKRFVMLKGSSGFYCYAILEHASGYPALTVDEARITFKLNT
AMFNYMAISDDIQRYMPSIEDRVAPRCAPLAYKEAVLLVDPVEPQFKGEVDDKYQYSLDN
KDNAVHGWISAGRTNPATGFWVITPSNEFKSGGPMKRELTSHVGPTSMAVFLGTHYTGID
IMLNLGDGEYWKKVLGPVFVYLNSHPNNGSDIRALWDDAKAQAREEASKWPYSFPESPDF
AKAGDRGTVTGTLLVRDAFASNKGGDVPAATAFVGLAAPDGQPGSWATQCKGYQFWTRAT
AGGRFSIAGVRAGTYSLYAWVPGFLGDYVKTSTVTVTPGGAVDLGTLVFEPPRSGPTLWE
IGVPDRTAAEFFVPDADPRYASKLFMGKDRYRQYGLWERYAELYPAGNDLVFTVGQSDYS
KDWFFAHVTRMVGNVSTPTTRQIRFNLDHVVANGTYTLRIALAAAQMSRLTVRVNGRATR
EAVFSTPEFGEGNAIARHGIHGGVQWSFEFPIRGYLLQQGKNSISITQTMAFGPFLGVMY
DYLRLEGPPPA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggctatcgtcgtgctcctcgccgttggagcgtcgaccgtactgcacctg
gcagccgccgaagtgccaccgcccgacgcagcccagcatggtgttacagtaagcgtcagc
caacgccaggtaattgtggacaacggcgtggtgcaggtgacgctgtcaacgccacaggga
cacatcaccgacgtccgctacaacggcgagcaaaaccttctgtactacactggcggggcc
aatactgcagggtattgggacgtggtctgggactatcccggatcaggtcggccaggaatg
ctcaacatgttggacggttcagagttgagggtagtatcctcaagcgaagagaaagtggaa
ctttctttcaggagcaactacaatccgtcgctcccaaacagcgtcaggctaaacatcgat
aagaggtttgtgatgctgaaaggcagctccggtttctactgctacgccattttggagcac
gccagtggctatcctgctctcaccgtcgacgaggctcggatcaccttcaagctcaacacg
gccatgttcaactacatggcgatctcagacgatatacagaggtacatgcccagcatagaa
gacagagttgcgccacgttgcgctccactggcgtacaaggaggccgtcctgctggtggac
cccgtggagccacagttcaagggggaggtggacgacaagtaccagtactcgctggacaac
aaggacaacgccgtccatggctggatcagcgccggccgcaccaacccggccacgggcttc
tgggtcatcacacccagcaacgagttcaagagcggcggccccatgaagcgggagctcacc
tcccacgtcggacccacctccatggccgtgtttctagggacgcattacactgggatcgac
ataatgctgaacctgggcgacggcgagtactggaagaaggttctgggcccggtgttcgtc
tacctcaactcccaccccaacaatggcagcgacatccgggctctctgggacgacgccaag
gcgcaggcgcgagaggaagccagcaagtggccgtacagcttcccggagtcgccggacttc
gccaaggcgggcgacaggggcacggtcaccggcactctcctggtcagggacgcgttcgcg
agcaacaagggcggcgacgtgcctgctgcaacggcgttcgtcgggctcgccgcgccggat
gggcagcctggctcctgggcgacgcagtgcaaggggtaccagttctggacgagggcgacg
gccggcggccggttcagcatcgccggcgtccgggctgggacgtacagcctctacgcgtgg
gttcccgggttcctcggagactatgtgaagacctccacggtgaccgtaacgccaggtggc
gccgttgaccttggtacccttgtgttcgagccgccgaggtcgggcccgacgctgtgggag
atcggcgtgccggaccggaccgccgcggagttcttcgtccccgacgccgaccccagatac
gccagcaagctcttcatgggcaaggacaggtacaggcagtacggcctgtgggagaggtac
gccgagctgtacccggctggaaatgacctcgttttcacagttggtcagagcgactactca
aaggactggttcttcgcacatgtcacaaggatggttggcaacgtcagtacaccgacgaca
cggcagatacgcttcaacctcgaccacgtcgtggcaaacggcacctacactctgcgcatt
gctcttgcagctgctcaaatgtccagactcacggtgcgcgtgaacggcagagcgactagg
gaagccgtgttcagcacgccggagttcggcgagggcaacgccatcgcgcggcacggcatc
cacggcggcgtgcagtggagcttcgagttccccatcaggggctacctgctgcagcaaggc
aagaacagcatcagcatcacgcagacgatggcgttcgggcccttcttgggggtcatgtac
gactacctcaggctggaagggcctccgccggcgtga
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