Miscanthus floridulus: 136481631
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Entry
136481631 CDS
T10264
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mflo Miscanthus floridulus
Pathway
mflo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136481631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136481631
03036 Chromosome and associated proteins [BR:
mflo03036
]
136481631
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136481631
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136481631
PBAF complex
136481631
GBAF(ncBAF) complex
136481631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF4428
Motif
Other DBs
NCBI-GeneID:
136481631
NCBI-ProteinID:
XP_066335061
LinkDB
All DBs
Position
9:29119166..29124216
Genome browser
AA seq
779 aa
AA seq
DB search
MPRKASSTSDSRLKWRKRKRNPDTSPSKPSTSAAADHSSDSDSADEDVAAVHGAAGAGDD
DEAPAASEDPAALGLREAEVLPSAEAISGFPAAKRRVVNRPHPSVLALLEAERSASSGDV
PTVALPVLENISHGQLQVLSGVLPDHPSLATDPDKPSLYVCTPPPLMEGHGVPKQFQGRL
HVVPKHSDWFSPGTVHRLERQVVPHFFTGKSPGHTPEKYVMLRNKVIAKYLENPSKRLAF
AECQGLVGSTAELYDLSRIVRFLDTWGIINYLAAGSVHRGLRMATSLLREEPTGELQLLT
APLKSIDGLILFDRPKCSLPAEDISSMAASSSNSEAVDFDAAFADLDAKIRERLSESSCS
YCLQPLPSLHYRSRKEADIFLCSDCFHDARYITGHSSLDFQRVDGDNDGSENDSDKWTDE
ETLLLLEGIEKYNDNWDDIAGHVGTKSKAQCIYHFIRLPVEDGLLENVEIPNAPIPFRPQ
SNGYQHSDSNGSTSGAPVQNIQQGNQLPFINSSNPVMSLVAFLASSIGPRVAASCAHAAL
SFLTRDDDSRVSSEGMHADGMGNGTNPKFRNHNGGSPSVSPENVKHAAMFGLSAAAMKSK
LFADQEEREVQRLAATVINHQLKRLELKLKQFAEVETLLLKECEQVERVRQRISAERVRM
RSALLGPTGSGLPGGSSTMPSNPAGMSPRPVGVPGSMPQTSMPATYANNMQGHGHPQMPF
LHQRPQMLSFGPRLPLSAIQTQPSPQASNIMFNSGMPNSIAPNHHQLLRSSSGNNSSAG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtaaggcctcgtcgacctcagattcgcgcctcaaatggcgcaagcggaagcgc
aaccccgacacgtccccgtccaagccctccacctcggcggccgccgaccactcctccgac
tccgactccgctgacgaggacgtcgccgccgtccacggcgcggcgggggccggcgacgac
gacgaggcccccgcggcgtccgaggaccccgccgcgcttggcctccgcgaggccgaggtg
ctgccctcggccgaggccatctctgggttccccgccgccaagcgtcgcgtggtcaaccgg
ccgcatccgtccgtcctcgcgctgctcgaggccgagcgatccgcttcttccggcgatgtc
ccgaccgtggcactgccggtgctagagaacatctcgcacgggcagctgcaggtgctgtcc
ggggtgcttccggaccacccgtcccttgcgacagaccccgacaagccgtccttgtatgtg
tgcacgccgcctcccctcatggaggggcacggggtgcccaagcagttccagggtcgcctc
catgtggttcccaagcactcagattggttctccccggggacagttcataggctggaaagg
caggtagtgccacacttctttacaggcaagtctccagggcacactccggagaagtatgtc
atgttaaggaataaagtcattgccaaatacttagagaacccaagcaagaggcttgctttt
gctgagtgccaggggcttgttgggagcacagctgaactgtatgatctgagtaggattgtt
aggttcttggacacttggggcatcatcaattacctcgcggctgggtctgtgcaccgtggc
ctgaggatggcaacttcgcttctaagagaggaacctacaggggaactgcagttgcttaca
gcgccattgaaatcaatcgatggtttaattttgtttgaccggccaaaatgcagcctccca
gcggaggacatttcttctatggcagcgtcttcgtcgaactcggaggctgtggattttgat
gctgcatttgcagacttggatgcaaagatcagggagcgtttgtctgagagctcttgcagt
tattgcttacagcctttgccaagtttacattaccggtcacgaaaggaggcagatattttt
ctatgttctgattgcttccatgatgcgagatatattactgggcattctagcttagatttc
cagagagtcgatggggataatgatggatcagaaaatgatagtgataaatggactgatgaa
gaaacattgttgctgttggaaggcattgagaagtacaatgacaactgggatgacattgca
ggtcatgttggaacaaaatcaaaggcacaatgtatttaccattttattcggttgccagtg
gaagatggtttgttagagaatgttgagatacctaatgcacccattccatttcgaccacaa
agcaatggttatcaacattcagattccaatggcagcacttcaggagctccagttcaaaat
attcaacaaggaaatcagcttccattcattaattcttctaatccggtgatgtcactggtt
gcatttttggcctcttcaattggaccaagagttgcagcatcatgcgcacatgcagcatta
tcttttttgactagagatgatgattccagggtgagttcagaaggcatgcatgctgatggt
atgggcaatggtacaaatccaaaatttcggaaccataatggtggttcaccatccgtttct
ccagaaaatgtgaaacatgctgccatgtttggtctgtcagcagcagcaatgaagtctaag
ctctttgccgatcaagaggaacgtgaagttcaaaggctagctgctactgtaataaatcat
cagttaaagagattggagttgaagctgaagcagtttgcggaagttgagaccttgctcttg
aaggaatgtgagcaagtagaaagggttagacagaggatttcagctgaacgagtcaggatg
aggtcagccctattaggtcccaccggaagcggtctaccagggggcagtagcaccatgcca
tcaaatccagcaggcatgagccccagaccagtcggtgtgccaggctccatgccacagacc
agcatgccagccacatatgccaacaacatgcaggggcatgggcatcctcagatgccgttc
ctacatcagcggccgcagatgctttctttcggccctcgcctaccactctcagccatccag
actcaaccatcgccacaggcatcaaacatcatgttcaactctggcatgcccaattcgatt
gctcctaaccaccatcagttgctgagatcatcttctggaaacaattctagtgcaggatag
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