KEGG   Miscanthus floridulus: 136485068
Entry
136485068         CDS       T10264                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03030  DNA replication
mflo03410  Base excision repair
mflo03420  Nucleotide excision repair
mflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136485068
   03410 Base excision repair
    136485068
   03420 Nucleotide excision repair
    136485068
   03430 Mismatch repair
    136485068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mflo03032]
    136485068
   03400 DNA repair and recombination proteins [BR:mflo03400]
    136485068
Enzymes [BR:mflo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     136485068
    6.5.1.6  DNA ligase (ATP or NAD+)
     136485068
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     136485068
DNA replication proteins [BR:mflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    136485068
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     136485068
DNA repair and recombination proteins [BR:mflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     136485068
   NER (nucleotide excision repair)
    Other NER factors
     136485068
   MMR (mismatch excision repair)
    Other MMR factors
     136485068
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 136485068
NCBI-ProteinID: XP_066338116
LinkDB
Position
1:complement(61817323..61824679)
AA seq 879 aa
MFLLRATSTTTATSSLLLRSRPLPSPKTLALAPPSTILPFSIRSRLSASTSASPRRRATA
AAAPGKSGEKKPPTARAKRAAAAAGMSASGGGSSGKRTVADVLMGNARAAASKAKKAAPS
PKKPRAKPDGAEVEPEAAAVAEKPPSPVRSKRASSPAKSPKLLADGPTSPAKSKGPAAAA
QLDAAKENSPSPKRSKTLAAKSDTQPSGEGVVSHTGEKKRAASPKKAKTTDSPKTEEKNT
TLELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMAT
TPDDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLV
AKASRSSQKMMFKPKPLTIARVLSTFRTIAKESGKDSQDKKRNHMKGLLVAATDCEPQYI
TRLLQSKMRIGLAEKTVQMALGQAAVYSDKNSSPPKVQSPFEEAAKIIKQAYSVLPIYDK
IVPAILEVGVWKLPETCTFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQ
IHCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDRVKQKILPF
QILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFQL
ATAITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGD
SLDLVPIAAFYGRGKRTGVFGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSSSLRSK
VIEKPKAYYRFADTMDPDVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRL
LRLRDDKSPEQATTSDQIADMYRSQKINHGYNQEDEDDD
NT seq 2640 nt   +upstreamnt  +downstreamnt
atgttcctcctcagagccaccagcaccaccacggccacctcctcgctcctcctccgctcc
cgtccgctcccgtcgcctaaaaccctagcactcgccccgccttctactatcctccccttc
tccatccgctcccgcctctccgcctccacctccgcctctccccgccgccgtgcgaccgcg
gcagccgctccaggcaaatccggggagaagaagccgccaaccgcgagggccaagcgggcg
gcggcggcggccggaatgtcggcctccggtggcggatcctcggggaagcgcacggtggcg
gacgtgctgatggggaacgcacgggccgctgccagcaaggcgaagaaggcagcgccgtcg
ccgaagaagccccgggcgaaacctgacggcgcggaagtcgaaccggaggctgcggcggtg
gcggagaagccgccttcgccggtgaggtccaagcgggcgtcgtccccagcgaagtctccc
aaattgctggctgatgggcctacatcgccggctaagtccaagggtccagccgcggccgct
caattggatgcggcgaaggagaattccccgtcgccaaagaggtccaaaaccctagccgct
aaatccgacacccagccttctggtgaaggtgttgtctcgcacaccggtgagaagaagcgg
gccgcttcacccaagaaggccaaaaccacagattccccaaagacagaggagaagaatacc
accctagagctaaagaagaaaggcagtgagtttgacccgatggctgctgcctattggaag
cctggtgagcccgtgccattcctgttcctggctcgggcacttgatctcatctccaacgag
agtggccgcatcgttattacagaaatcctatcaaatgtgtttcgcacagtgatggcaaca
acaccggatgatctccttgcaactgtgtacctctcagccaaccggattgcgccacctcat
gaggggattgagcttgggattggggatgcatcagtcatccgtgcccttgcagaggcatat
ggacgcaaagaggagcatgttaagaaggaccttaaggaattgggtgatttggggctcgtg
gcaaaagcaagcaggtcatcacagaagatgatgtttaagccgaaaccactgacaatagct
cgggtgcttagcacttttcggacaattgcaaaggaatcaggcaaagacagtcaagataaa
aaaagaaaccatatgaagggacttcttgttgctgcaactgactgtgaaccccagtacatc
acgcgccttcttcagtcaaagatgaggattgggctggcagagaaaactgtccaaatggct
cttgggcaagctgccgtatattctgacaaaaattcttcgccaccaaaagttcagtcacct
tttgaagaggctgcaaaaataattaaacaagcatattcagttcttccaatatatgataaa
attgtcccagcgatacttgaagtaggagtttggaagcttccagagacatgcacattttcc
ataggtgtccctgttggccctatgttagcaaaagcaacaaaatctgtctcagagatcatt
gacaagtttcagggtcttgaatacacttgtgagtacaagtatgatggtgaaagggctcag
atacattgcatggaggatggttcagtagagatttatagtcggaatgctgaaagaaacact
ggaaagtatccagatgttgttgatgcagtttctagatttcggaagcctacagtcaaatca
tttgtcttggactgtgaaattgttgcctatgatcgtgtaaaacagaaaattttgcctttt
cagatactgagcacaagggctcgcaagggtgttaccataaatgacatcaaagtttcagtc
tgtacttttggctttgatattctttacataaacgggaaacctcttctccaggaacaactc
aaaattcgtcgagagcatctttacaactccttcgaagaagtgccaggtgtttttcaattg
gctactgcaattacatcaaatgacctggaggagatacagaaatttcttgacacagctgtc
aactccagttgtgaggggttgattatcaagacattggataaagacgctacatatgagcca
gcgaagcgatcaaacaattggttgaaactgaagaaggattacatggatagcattggagac
tctttggacttagtacctattgctgccttctatggtagaggaaaacgaacaggtgtcttt
ggatcattcctcctggcatgctatgatgagcagaatgaagaatatcaaacaatatgcaac
ataggtactggattttctgagcaacagcttgaagaacgttcttcgagccttcgaagtaaa
gtgatagaaaaaccaaaggcatactatagatttgctgacacaatggaccctgatgtgtgg
tttgagccatcagaggtgtgggaggtcaaagctgcagatctgagcataagccctgtacat
cgtgctgctaatggtatagtcgatccaaataagggtatctccctaagattccctcgtctg
ttgagattacgtgacgataaaagcccagaacaagccaccacgtctgaccaaatcgctgac
atgtatcggtctcaaaagatcaaccacggttataaccaggaggatgaggacgatgactga

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