Miscanthus floridulus: 136486260
Help
Entry
136486260 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mflo03009
]
136486260
04121 Ubiquitin system [BR:
mflo04121
]
136486260
Enzymes [BR:
mflo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136486260
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
136486260
Ubiquitin system [BR:
mflo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136486260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
HEAT_GCN1
zf-rbx1
zf-C3HC4
FANCL_C
zf-ANAPC11
zf-C3HC4_2
zf-RING_16
HEAT_MROH2B_C
RINGv
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
136486260
NCBI-ProteinID:
XP_066339232
LinkDB
All DBs
Position
10:12149987..12161765
Genome browser
AA seq
1902 aa
AA seq
DB search
MGKQKGRASSSGMAASLVPHAQGAVPTVGFGGYHGAVRVEPAAPSDPDVPIRLTPDVDGE
VLQNLKRLGRKDPTTKLKALSALSTLFGQKPGEEVVQIVPQWAFEYKRLLLDYNREVRRA
THEAMSSLITAVKKGIAPHLKSLMGPWWFSQFDPAPEVAQAARRAFDAAFPQSDRRLDAL
MLCVKETFLYLNENLKLTPQALSDKATPMDELEDMHQRVMSSSLLAMATLIEILLGVKLQ
SCDGDSTNTENNNLSKVRSTILSSAEAAFCMHKCFLDVLKSKSSVIRSATYSLLTSYIKH
VPHVFDEETMKKLSPTLLGAFHEKDASCHSSMWDAILVFSRKFPEAWSYCNIHKVVLSQF
WHFLQNGCYGSKQVSYPLLVQFLDSMPPKAVMGQQFVFDFLHNLWAGRNQRQLSAADSLA
FCGAFKQSFLWLLKNASRYFTGDSSDDIPIKLITDVLAKIIWRDYLLLSGDTTSGSVLLS
HKTSGLAVNMHYPTYYLQDLKKCIIEILDVIADTENHLLNISCQSLLRDCLDIIQQGEKL
SKFQNHAEQLVSFFLSLDQIVVCKGEIWPLERLAKPLVEQSLPAIKFMDTPCLVKLLSIL
VEIFGPTPLFFKNYKKNDEKLDIKSYLEFFNDELLPWCLDGKYSTCNSKIVLLLSLIQDE
SFFDQWCSIIKCTTSEQKHSVDDKTSNIMGRFELLTLLLQKIRERIVGGKLRNLQENGYL
PEHWRHDILDSTAASVFCDLPASDCHVSFICAALGGSDQEDQICFLSPETVCKILGSILK
NLALVLMASTFEWARLAHSLLPAEPEHLKVPEGNSSIINFEMARSAFKVLQGSLFSLRRL
EENSVFPSILGALFVIEWECSMSLALVEENYLEDHIEDTEVGVSMCSSSKGYLDEKMHLK
ANLAESIHAFRQSLSPSFWNNLHSCTSNRLANILAQCVRYAVFQTRDLHVERTAILCSEW
VVDMLKLICLDHRNFQSFFDLLLSEGEYWPLWLMPSLQNGHASVKVKLHPDITDEIELKH
ERFVAFVDRLILKLGFSEVVLGIPGNILSATSQLIDITSRIFSLSRAWVAGEVLCTWTWT
GGCALKTFLPSLVQYMKDESYLEISIVPLLLDALLGAALMHESGPWVLFNAWHLSDNEID
KIQDRFLRALVALLFTINTNDCLWRESDALVFFEQLLSNLFIGSSVNRKCLKILPYVMTS
IIKQFSALNRGSSYADLVGKSIQSWLDAAISCLSTSPREIPVQDIEDWMQVVLSCFPLRI
TGGAQKLVVVVEREISDTERSLMLTLFQKYQIFYGSIASSLLTSETAVSTTVELLGVKLT
AVVVGYCWRNLQENDWHSVFRMVFKCIESSVLLVEEMTDGINDATINQVSSEDALEKLKL
VVGTTDKLTLNLAESALVTMCHLNHLCNIQEAENSWSVQLIRSGDYAESNDKMVESILRL
FLASGVSEAIAKSCSEEASSVIGSSRHAYLHFWELVASFIKNAPLQIRKSALESMELWGL
TKGSVSGLYSILFSSQPIFHLQLAAFSLLLSEPFCQLSLVKNCSMGENCSSVQQSGISQS
AELMPDSEKKGHLRDELSDLIEFPTSELLKTDLTARYRVDVFIAWALLLSHLQILPASSS
IRGDVLQYIQEKVSPCILDCIFQHIPVKAAAPSGKKKDTELAPEAEAAAKASKNAIATCS
LLPYLESVWPIGTLQMASLAGSLYGMMIRLLPSFVRTWFTTLRDRSLSYSIESFTKQWCS
PPLLLDEFSQVKDSVYGDENFSVSVNRSAFEIVATYKKEETGIDLVIRLPNCYPLRHVDV
ECTRSLGISEVKCRKWLLSLTSFVRNQNGAIAEAIRTWKSNFDKEFEGVEECPICYSILH
TSNHSLPRLACKTCKHKFHGACLYKWFSTSNKSTCPLCQTPF
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcagaagggccgcgcgtccagcagcggcatggcggcgtcgctggtgccgcac
gcccagggcgccgtccccaccgtcggtttcggcggctaccatggcgccgtccgtgttgag
cccgctgcgccctccgacccagacgtcccgattcgccttaccccagatgtggatggtgaa
gtgcttcagaacctaaagaggctaggaaggaaagatccgacaacaaagctcaaggcctta
tctgctctctctacactctttggacaaaaacctggtgaggaagttgtgcagattgttcca
caatgggcatttgagtacaagaggctgctacttgactataacagagaagttcgccgtgct
actcatgaggccatgtctagcctcatcacagcagtcaagaaaggtatagcaccacatctg
aagtccttgatgggtccttggtggttttctcagtttgatcctgctcctgaggttgctcag
gctgctcgacgtgcgttcgacgcagcattcccgcagtcagatagaagactggatgcatta
atgttatgtgtgaaggaaacatttctttacctaaatgagaacttgaagctaactccacaa
gctttgtctgacaaggctacaccaatggatgaactggaagatatgcatcagagggtaatg
tcatcatcactgttagctatggcaactcttatagaaattttactaggagtgaaattgcaa
agttgtgatggtgacagtaccaatactgaaaacaataatctgtcaaaagttaggtcaact
atactttcttctgctgaagctgcattctgtatgcataaatgttttcttgacgtcctcaag
tcaaaaagttctgttatacggtcagctacatactcactgcttacaagttatatcaaacat
gttcctcatgtttttgacgaagaaaccatgaagaaactttctccaactctacttggtgca
tttcatgagaaggatgcatcatgtcactcttctatgtgggatgcaattcttgttttctct
agaaagtttccagaggcatggtcatattgcaatattcacaaagttgtcctcagtcagttt
tggcatttcctacaaaacggatgttatgggtccaaacaagtttcatatcctcttctagtt
cagtttttggactctatgccacctaaagcagtcatgggacaacaatttgtttttgatttt
ttgcataatctttgggctggaaggaaccagaggcagttatcagctgctgatagtttggct
ttctgtggtgcctttaaacagagttttttgtggcttctaaagaatgcatcaagatatttt
actggagattcttcagatgatatacccatcaagcttataactgatgtacttgccaaaata
atttggcgtgactaccttttattgtctggagacacaactagtggcagtgttttgttatct
cataaaacttcagggttagctgtgaacatgcactacccaacatattatcttcaggatttg
aagaaatgcatcattgaaatactggatgtgattgcagatacagaaaatcatttacttaat
atttcttgtcagtcgcttttaagggactgtttggacataattcaacaaggggagaagctt
tccaagtttcagaatcatgcagaacaacttgtgtcattctttctatctttggatcaaatt
gttgtatgcaaaggtgaaatatggccactggaaagattagcaaaaccactggttgagcaa
tctttgccagctatcaagttcatggacactccatgccttgttaagcttctttcaattttg
gttgaaatatttgggcccactcccttattttttaagaattataagaaaaatgatgagaag
ttggatatcaagtcttatctggagtttttcaatgatgaattgctcccttggtgtttggat
ggaaaatatagcacctgtaactcaaagattgttttgttactttccttaattcaagacgaa
tccttctttgaccaatggtgttccatcatcaaatgtaccacatctgaacaaaagcactcc
gttgatgataagacctcaaacattatggggcgatttgaattgcttacgctgttacttcag
aaaatcagggaaagaattgttgggggaaagctaagaaacttacaggaaaatggttatctt
ccggaacattggcgtcatgatatattagattctactgcagcttctgtcttctgtgatttg
cctgcttcagattgtcatgttagttttatatgtgctgcacttggtggctcagatcaagag
gatcaaatctgctttctttctcctgagactgtttgtaaaattcttggatccattttaaag
aatttggcattggtactcatggcatcaacttttgaatgggcaaggttagcacattctttg
ttgcctgctgaacctgagcacttgaaggttccagaaggaaattcctcaataattaatttt
gagatggctcggtctgcctttaaagttcttcagggtagcttgttttcactacggagactt
gaggaaaattctgtatttccttctattctgggagctctttttgtcattgaatgggaatgt
agcatgtctttagctcttgttgaagaaaattatttggaagatcatatagaagacacggaa
gttggtgtttctatgtgcagcagttcaaaaggttatttggatgagaaaatgcatttgaag
gctaaccttgcagaaagcatacatgcttttcgccaaagcttaagtccatccttttggaat
aatcttcactcatgcacatcgaatagattggcaaatattctagctcagtgtgtcaggtat
gctgtatttcagacgagagacttgcatgtggaaaggacagcaatcttatgttccgagtgg
gtggtggacatgttgaagctcatctgtcttgatcacagaaactttcaaagtttttttgat
cttttattatctgagggagaatattggccactctggttgatgccatctttacaaaatggg
catgcatctgtgaaggtcaagctgcatccagatattacagatgaaattgaactgaaacac
gagcgatttgttgcctttgttgataggcttattctcaaacttggctttagtgaagtggtt
ttaggtattccaggaaatatactgtctgccacatcacaattaattgatatcacttcacgc
atcttttccttgtccagagcatgggtggctggtgaggtcctttgcacttggacatggaca
ggaggctgtgcactgaaaacattcttaccttcgctggttcagtacatgaaagacgaatca
tatcttgagatcagcattgtgcccttgttgcttgatgcactgttaggtgctgcccttatg
catgagagtggtccatgggtactgtttaatgcttggcatctttctgacaatgagattgat
aaaattcaagatcgttttctccgtgctcttgtggctttgttatttactattaatacaaat
gattgtctctggagagaatctgatgcacttgtattttttgagcaactgttgagcaatctt
ttcattggctcatcagttaatagaaaatgcttgaagattctaccctatgttatgacctcc
atcataaaacagttctcagccttgaacagaggttcttcgtatgctgatttggtggggaaa
agcatacagagttggcttgatgcagccatctcttgtctgtcaaccagcccaagggagata
cctgtacaagatattgaggactggatgcaagtggtgttgtcttgctttccattgaggata
actggaggagcccagaaattggtagttgtggttgagcgagagattagtgatacagagaga
tcactaatgctgactctgtttcagaaataccagattttctatggtagtatagcttcatca
ttgttgactagtgaaactgcagtatcaacgacagttgaattactgggagtgaaactgaca
gctgttgtggttgggtattgctggagaaaccttcaggagaatgattggcattctgtgttc
cgcatggtattcaagtgtattgaatcatctgttttgcttgtggaagaaatgactgatggc
ataaatgatgccacaataaaccaggtatcaagtgaagatgccttggagaagcttaagtta
gtggttggcactacagataagttaacattaaaccttgcagaatctgctttggttacaatg
tgtcacctcaaccatctttgtaatatccaagaagcagaaaattcctggagtgtacagctt
attagatcaggggactatgctgagagtaatgacaagatggtagagagtatcctccgtttg
ttcttggcttctggtgtttcagaggcaatcgcaaaatcttgcagtgaagaggcttcatct
gtcataggttctagtcgccatgcttatttgcacttttgggaacttgtggcatcattcata
aaaaatgctccactgcaaattagaaagtctgcactggagtccatggaactttggggactg
accaagggttccgtcagtggattatattcgattcttttctcctcacaaccaatatttcac
ttacagcttgcagctttctctctacttctgtctgagcccttctgtcagctttcactggtt
aaaaattgttcaatgggagaaaattgctcatctgttcagcaatctggcataagccaaagt
gctgagttgatgccagattcagagaagaaagggcatctaagagatgaactttcagactta
atcgagttcccaacatctgaacttctcaaaactgatctgacagctcgctatagggttgat
gtattcattgcctgggcattgttgctgtcccacctgcagatactaccagcatcttccagt
atcaggggagatgtgcttcaatatatacaagaaaaggtcagtccgtgcatattggattgc
attttccagcatatcccagtaaaggctgctgcaccgagtgggaagaaaaaggatactgag
ctagcgcctgaagcagaagctgctgccaaagcttcgaagaatgccatagctacttgttct
ttgcttccgtacttggaatctgtttggcccattgggactttgcaaatggcctcacttgca
ggctcattgtatgggatgatgattaggctgctgccttcgtttgtgcgcacatggtttact
accttgagagaccgttcattgtcatactcaatcgagtccttcaccaaacaatggtgcagc
cctcctcttctgctagatgaattttctcaggttaaggactctgtgtacggggatgagaat
ttctcagttagcgtcaacaggtcagctttcgaaattgttgctacatacaaaaaggaggag
acaggaattgatcttgtcatacgcctcccgaattgttaccccctgcgccacgtcgatgtt
gaatgcacaagaagtttgggtatcagtgaagtgaagtgcagaaaatggttgctttccctc
acatcattcgtccgcaaccagaacggcgcaatagccgaggcgatccgcacatggaagagc
aatttcgacaaggagttcgagggcgtggaggaatgcccaatctgttacagcattctccac
accagcaaccacagcctcccacggctggcgtgcaagacgtgcaagcacaagttccatggc
gcctgcctctacaagtggttctcgacgtccaacaaatcaacttgcccactgtgccagact
ccgttctag
DBGET
integrated database retrieval system
