Miscanthus floridulus: 136486446
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Entry
136486446 CDS
T10264
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mflo Miscanthus floridulus
Pathway
mflo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136486446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136486446
03036 Chromosome and associated proteins [BR:
mflo03036
]
136486446
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136486446
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136486446
PBAF complex
136486446
GBAF(ncBAF) complex
136486446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF4428
Motif
Other DBs
NCBI-GeneID:
136486446
NCBI-ProteinID:
XP_066339435
LinkDB
All DBs
Position
10:30537286..30542517
Genome browser
AA seq
791 aa
AA seq
DB search
MPRKAPSTSDSRLKWRKRKHNPGASPSKPSTSAAAAAAADHSSDSDSADEDAAAVHGAAG
DRDGAAGDDDEAPAASEDPAALGLREAEVLPSAEPISAFPAAKRRVVNRPHPSVLALLEA
ERSACSGDVLAVAPPALENISHGQLQVLSGVLPDHPSLATDPDKPSLYVCTPPPLMEGHG
VPKQFQGRLHVVPKHSDWFSPGTVHRLERQVVPHFFTGKSPGHTPEKYVMLRNRVIAKYL
ENPSKRLAFAECQGLVGSTAELYDLSRIVRFLDTWGIINYLAAGSVHRGLRMATSLLREE
PTGELQLLTAPLKSIDGLILFDRPKCSLPAEDISSMAPSSSNSEAVDFDAAFADLDAKIR
ERLSESSCSYCLQPLPSLHYRSQKEADIFLCSDCFHDARYITGHSSLDFQRVDGDNDGSE
NDSDKWTDEETLLLLEGIEKYNDNWDDIAGHVGTKSKAQCIYHFIWLPVEDGLLENVEIP
NAPIPFRPQSNGYQHSDSNGSTSGAPVQSIQQGNQLPFINSSNPVMSLVAFLASSIGPRV
AAACAHAALSFLTRDDDSKVSSEGMHADGMGNGTNPNFRNHNGASPSISPENVKHAAMFG
LSAAAMKSKLFADQEEREVQRLAATVINHQLKRLELKLKQFAEVETLLLKECEQVERVRQ
RISAERVRMRSALLAPTGSGLPGGSSTMPSNPAGMSPRPVGVPGSMLQTSMPATYANNMQ
GHGHPQMPQMLFLHQRPQMLSFGPRLPPSAIQTQPSPQASKIMFNSGMPNSIAPNHHQLL
RSSSGNNSSAG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggccccgtcgacctcagattcgcgcctcaaatggcgcaagcggaagcac
aaccccggcgcgtccccatccaagccctccacctcggccgccgcggcggcggccgccgac
cactcctccgactccgactccgccgacgaggacgccgccgccgtccacggcgcggcgggg
gacagggacggggcagccggcgacgacgacgaggcccccgcggcgtccgaggaccccgcc
gcgctcggcctccgcgaggcggaggtgctgccctcggccgagcccatctctgcgttcccc
gccgccaagcgccgcgtggtcaaccggccgcatccgtccgtcctcgcgctgctcgaggcc
gagcgatccgcttgttccggcgatgtcctggccgtggcaccgccggcgctagagaacatc
tcgcacgggcagctgcaggtgctgtccggggtgcttccggaccacccatcccttgcgaca
gaccccgacaagccgtccttgtatgtgtgcacgccgcctcccctcatggaggggcatgga
gtgcccaagcagttccagggtcgcctccatgtcgtgcccaagcactcagattggttctcc
ccggggacagttcataggctggaaaggcaggtagtgccacacttctttacaggcaagtct
ccagggcacactccggagaagtatgtcatgttaaggaatagagtcattgctaaatactta
gagaacccaagcaagaggcttgcttttgctgagtgccaggggcttgttgggagcacagct
gaactgtatgatctgagtaggattgttaggttcttggacacttggggcatcatcaattac
cttgcggctgggtctgtgcaccgtggcctgaggatggcaacttcgcttctaagagaggaa
cctacaggggaactgcagctgcttacagcgccgttgaaatcaatcgatggtctaattttg
tttgaccggccaaaatgtagcctcccagcggaggacatttcttcgatggccccgtcttca
tcgaactcggaggctgtggattttgatgctgcatttgcagacttggatgcaaagatcagg
gagcgtttgtctgagagctcttgcagttattgcttacagcctttgccaagtttacattac
cggtcacaaaaggaggcagatatttttctatgttctgattgcttccatgatgcgagatat
attactgggcattctagcttagatttccagagagtcgatggggataatgatggatcagaa
aatgatagtgataaatggactgatgaagaaacattgttgctgttggaaggcattgagaag
tacaatgacaactgggatgacattgcaggtcatgttggaacaaaatcaaaggcacaatgt
atttaccattttatttggttgccagtggaagatggtttgttagagaatgttgagatacct
aatgcacccattccatttcgaccacaaagcaatggttatcaacattcagattccaatggc
agcacttcaggagctccagttcaaagtattcaacaaggaaatcagcttccattcattaat
tcttctaatccggtcatgtcactggttgcatttttggcctcttcaattggaccaagagtt
gcagcagcatgcgcacatgcagcattatcttttttgactagagatgatgattccaaggtg
agttcagaaggcatgcatgctgatggtatgggcaatggtacaaatccaaattttcggaac
cacaatggtgcttcaccatccatttctccagaaaatgtgaaacatgctgccatgtttggt
ctgtcagcagcagcaatgaagtctaagctctttgccgatcaagaggaacgtgaagttcaa
agactagctgctactgtaataaatcatcagttaaagagattggagttgaagctgaagcag
tttgcggaagttgagaccttgctcttgaaggaatgtgagcaagtagaaagggttagacag
aggatttcagctgaacgagtcaggatgaggtcagccctattagctcccaccggaagcggt
ctaccagggggcagtagcaccatgccatcaaatccagcaggcatgagccccagaccagtc
ggtgtgccaggctccatgctacagaccagcatgccagccacatatgccaacaacatgcag
gggcatgggcatcctcagatgcctcagatgctgttcctacaccagcgaccgcagatgctc
tcgttcggccctcgcctaccaccctcggccatccagactcaaccatcgccacaggcatca
aaaatcatgttcaactctggcatgcccaattcgatcgctcctaaccaccatcagttgctg
agatcgtcttctggaaacaattctagtgcaggatag
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