Miscanthus floridulus: 136486473
Help
Entry
136486473 CDS
T10264
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mflo Miscanthus floridulus
Pathway
mflo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136486473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136486473
03036 Chromosome and associated proteins [BR:
mflo03036
]
136486473
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
136486473
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
136486473
PBAF complex
136486473
GBAF(ncBAF) complex
136486473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF4428
Motif
Other DBs
NCBI-GeneID:
136486473
NCBI-ProteinID:
XP_066339470
LinkDB
All DBs
Position
10:complement(33334961..33447661)
Genome browser
AA seq
791 aa
AA seq
DB search
MPRKASSTSDSRLKWRKRKRNPDASPSKPSTSPAAAAAADHSSDSDSADEDAAAVHGAAG
DRDGAAGDDDEAPAASEDPAALGLHEAEVLPSAEPISAFPAAKRRVVNRPHPSVLALLEA
ERSACSGDVLAVAPPALENISHGQLQVLSGVLPDHPSLATDPNKPSLYVCTPPPLMEGHG
VPKQFQGRLHVVPKHSDWFSPGTVHRLERQVVPHFFTGKSPGHTPEKYVMLRNRVIAKYL
ENPSKRLAFAECQGLVGSTAELYDLSRIVRFLDTWGIINYLAAGSVHRGLRMATSLLREE
PTGELQLLTAPLKSIDGLILFDRPKCSLPAEDISSMAPSSSNSEAVDFDAAFADLDAKIR
ERLSESSCSYCLQPLPSLHYRSQKEADIFLCSDCFHDARYITGHSSLDFQRVNGDNDGSE
NDSDKWTDEETLLLLEGIEKYNDNWDDIAGHVGTKSKAQCIYHFIRLPVEDGLIENVEIP
NAPIPFRPQSNGYQHSDSNGSTSGAPVQNIQQGNQLPFINSSNPVMSLVAFLASSIGPRV
AASCAHAALSFLTRDDGSRVSSEGMHADGMGNGTNPNFRNHNGASPSISPENVKHAAMFG
LSAAAMKSKLFADQEEREVQRLAATVINHQLKRLELKLKQFAEVETLLLKECEQVERVRQ
RISAERVRMRSALLGPTGSGLPGGSSTMPSNPAGMSPRPVGVPGSMLQTSMPATYASNMQ
GHGHPQMPQMLFLHQRPQMLSFGPHLPLSAIQTQPSPQASKIMFNSGMPNSIAPNHHQLL
RSSSGNNSSAG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggcctcgtcgacctcagattcgcgcctcaaatggcgcaagcggaagcgc
aaccccgacgcgtccccgtccaagccctccacctcgcccgccgcggcggcggccgccgac
cactcctccgactccgactccgccgacgaggacgccgccgccgtccacggcgcggcgggg
gacagggacggggcagccggcgacgatgacgaggcccccgcggcgtccgaggaccccgcc
gcgctcggcctccacgaggcggaggtgctgccctcggccgagcccatctctgcgttcccc
gccgccaagcgccgcgtggtcaaccggccgcatccgtccgtcctcgcgctgctcgaggcc
gagcgatccgcttgttccggcgatgtcctggctgtggcaccgccggcgctagagaacatc
tcgcacgggcagctgcaggtgctgtccggggtgcttccggaccacccatcccttgcgaca
gaccccaacaagccgtccttgtatgtgtgcacaccgcctcccctcatggaggggcatgga
gtgcccaagcagttccagggtcgcctccatgtcgtgcccaagcactcagattggttctcc
ccggggacagttcataggctggaaaggcaggtagtgccacacttctttacaggcaagtct
ccagggcacactccggagaagtatgtcatgttaaggaatagagtcattgctaaatactta
gagaacccaagcaagaggcttgcttttgctgagtgccaggggcttgttgggagcacagct
gaactgtatgatctgagtaggattgttaggttcttggacacttggggcatcatcaattac
cttgcggctgggtctgtgcaccgtggcctgaggatggcaacttcgcttctaagagaggaa
cctacaggggaactgcagctgcttacagcgccgttgaaatcaatcgatggtctaattttg
tttgaccggccaaaatgtagcctcccagcggaggacatttcttcgatggccccatcttcg
tcgaactccgaggctgtggattttgatgctgcatttgcagacttggatgcaaagatcagg
gagcgtttgtctgagagctcttgcagttattgcttacagcctttgccaagtttacattac
cggtcacaaaaggaggcagatatttttctatgttctgattgcttccatgatgcgagatat
attactgggcattctagcttagatttccagagagtcaatggggataatgatggatcagaa
aatgatagtgataaatggactgatgaagaaacattgttgctgttggaaggcattgagaag
tacaatgacaactgggatgacattgcaggtcatgttggaacaaaatcaaaggcacaatgt
atttaccattttattcggttgccagtggaagatggtttgatagagaatgttgagatacct
aatgcacccattccatttcgaccacaaagcaatggttatcaacattcagattccaatggc
agcacttcaggagctccagttcaaaatattcaacaaggaaatcagcttccattcattaat
tcttctaatccggtcatgtcactggttgcatttttggcctcttcaattggaccaagagtt
gcagcatcatgcgcacatgcagcattatcttttttgactagagatgatggttccagggtg
agttcagaaggcatgcatgctgatggtatgggcaatggtacaaatccaaattttcggaac
cacaatggtgcttcaccatccatttctccagaaaatgtgaaacatgctgccatgtttggt
ctgtcagcagcagcaatgaagtctaagctctttgccgatcaagaggaacgtgaagttcaa
agactagctgctactgtaataaatcatcagttaaagagattggagttgaagctgaagcag
tttgcggaagttgagaccttgctcttgaaggaatgtgagcaagtagaaagggttagacag
aggatttcagctgaacgagtcaggatgaggtcagccctattaggtcccaccggaagcggt
ctaccagggggcagtagcaccatgccatcaaatccagcaggcatgagccccagaccagtc
ggtgtgccaggctccatgctacagaccagcatgccagccacatatgccagcaacatgcag
gggcatgggcatcctcagatgcctcagatgctgttcctacaccagcgaccgcagatgctc
tcgttcggccctcacctaccactctcggccatccagactcaaccatcgccacaggcatca
aaaatcatgttcaactctggcatgcccaattcgatcgctcctaaccaccatcagttgctg
agatcgtcttctggaaacaattctagtgcaggatag
DBGET
integrated database retrieval system
