Miscanthus floridulus: 136487342
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Entry
136487342 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136487342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136487342
03009 Ribosome biogenesis [BR:
mflo03009
]
136487342
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136487342
Spliceosome [BR:
mflo03041
]
Complex A
U1 snRNP components
U1 related factors
136487342
Complex B
136487342
Ribosome biogenesis [BR:
mflo03009
]
Eukaryotic type
Pre-60S particles
Helicases
136487342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
136487342
NCBI-ProteinID:
XP_066340598
LinkDB
All DBs
Position
10:complement(137683922..137691004)
Genome browser
AA seq
1395 aa
AA seq
DB search
MAAQEAAAADSSGPRFAPDDPTLPAPWKALIDGATLYYWNPETNVTQYEKPAATAGVLPL
PAGPPPPTPAQVPEPAPGAYSQPNLQFGQAGQAGHQERPGQAAYPPQAGQLGQQQHTQQP
AQQQPFQQHVTAQHQASFQQVPYQQQQTHMPNQPHQYHSAHPQHMLYQHGPYMQPQQQQQ
APPYSYQADQQPQMPQTAYNQAQQPPMPQPTYNQGQSQQPPMPQPSYNQGQVQQPLMPQT
SYNQGQAQQPPMPQPSYNQGQQSMIPQSAYNQAQQPQILHGAYNQSQQPQGVRVSQSQGQ
HPQQSLSFHHPAQASQSPQVSQPQGLEMPSQQGKLQHGLPFTQYGKPPLSHGQQSPLLKD
DDGGVHEGKRTGFSLPLSQQRGQAPLPNQQLPSSHQHPGALSSQPNIPGVGGPLYPAKHL
PGGSSSAETNNMGFMNSPAQMHQGGADTNYQQKPVSGLAVLNHVGPSPIRPPMGFDRGNS
DGHIERDDPHSYGRFDGTKVLQQQPNLAPLPTSQNPMGMHNGPPYPRPDNFGGYNMAPPH
SVPNSHNLGPLPIGTSVRPPSSMFAPPDFPSVSSADAYRQHHEVTAMGENVPAPFMTFEA
TGFPPEILREIHAAGFSNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFIHLRR
CHNNPMLGPTVLVLAPTRELASQIQDEVVKFGQSSRVSCTCLYGGASKGPQLRELERGAD
IVVATPGRLNDVLEMKKISLHQVSLLVLDEADRMLDMGFEPQIRKIVDEIPNTRQTLMYT
ATWPKEVTKIAGDLLRDPVQVNIGSIDELVANKSITQYVEVVPPMDKQRRLEQILRDQER
GSKIIIFCSTKKMCDQLARGIGRNFNAVSIHGDKSQAERENVLNQFRTGRAPILVATDVA
ARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFLSEQDWKYAGDLVKLLQ
GANQHVPPQLQDMAARSASGGPRNQAAGMSRWDGPGGRRFEPGPGGPVGYGGVREGPGGF
GGREGPGGFGVRESPAMFGGPEGPDGLGGRAGPGGFGGREGPGGFGGHESPGGFGGRERE
GPGGFGGRKGPGGFGGRDGPGSGGFGGRGERGSGGFGSRGGASPGGFGGRGGRRDSSGFG
GRGRGDFSGFGGRGRGDSPGFGGRGRGDFSGGRGGRGRGFGGRGRSDRGPHDWFVSDGRG
RYDNRRGYGDKGRDRSCSRSPDRGRSRGYDRRTDSRSISRSRSRSRSWSRSRSRSGSWSR
SRSRSSSRSRSRSRSRDHGAAPERRPRARTGFDVLPPATGAAGSAPVPVPGPAPPPVPAL
APEQSLADTSTMSPMSPGGLVQPAAAAPLICGGNDNSFGGTPAGQPFQGTDAAFPSFPAG
ETFPGAAVQQAAPDV
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaggccgccgcagctgattcttcgggccctcggttcgctccggacgac
ccgacgctcccggcgccttggaaagctctgattgatggcgcgacgctgtactattggaat
ccagagacgaatgtgacccagtatgagaagcctgctgcaactgcaggggtgctccccttg
ccagcaggtcctccgccgccgacccctgcgcaggttccggaacctgcaccaggggcgtat
tcacagcctaacttgcagtttggccaagctggccaggcagggcaccaggagcgtcctggc
caggcagcttatcctcctcaggctggccagcttgggcagcagcagcatactcagcagcca
gctcagcagcaaccgtttcagcagcatgtcacggctcaacaccaggcttcgtttcagcaa
gtgccatatcagcaacagcagacgcacatgccaaatcagccgcatcagtaccacagcgcg
catcctcaacacatgctgtatcagcatggtccttacatgcaacctcagcagcaacagcag
gctccaccatattcgtatcaggcagaccagcagccacagatgccacaaaccgcctataat
caagctcagcagccaccgatgccgcaacctacctacaatcaaggtcagagtcagcagcca
ccgatgccgcaaccttcctacaatcaaggtcaagttcagcagccactgatgccgcaaact
tcctacaatcaaggtcaagctcagcagccaccaatgccacaaccatcctacaatcaaggt
cagcaatccatgataccacagtctgcctacaatcaagctcagcagcctcaaattctacat
ggtgcttataatcaaagccagcagccgcagggagttagggtttctcagagtcaagggcaa
catcctcaacaatctttgagctttcaccaccctgcccaagcttcgcagtcgccgcaggtt
tctcaacctcaaggacttgaaatgccatctcaacaaggtaaactgcagcatggattgccc
ttcactcagtatggaaaaccaccactgtcacatgggcaacaaagtccattgttgaaggat
gatgatggaggagttcatgaaggcaagcgaactggcttttcattaccacttagtcagcag
cgtggccaagctcctcttccaaatcagcagttaccttctagtcatcaacatcctggagcc
cttagtagccagccaaatatacctggagttggtgggccattatatcctgccaagcatctt
cctggtggatcatcctctgctgagactaataacatgggtttcatgaactcacctgcacaa
atgcatcaaggtggagctgatacaaactaccagcaaaaacctgttagtggccttgcagtt
ctaaatcatgttggtccatcaccaattcgacctccaatgggttttgataggggtaatagt
gatggtcacattgaaagagatgaccctcactcttatggaaggtttgatggaacaaaggtt
ctccagcagcagccaaatcttgctcctctcccaacttcacaaaatcctatgggcatgcat
aatgggccgccttatcctcgtccagacaattttggtggttataacatggcacctccacat
tcagtaccaaattcacataatcttggtccattgcctattggaacttcagtgaggccaccg
tcaagtatgtttgctcctccagattttccaagcgtatcttcagctgatgcataccgtcaa
caccatgaagtcactgccatgggtgagaacgttcctgctccgtttatgacatttgaggct
actggattccctccagagattctgagagagatccatgcagcaggcttttcaaatcccact
ccaattcaagctcagacatggcctgttgcactgcaaaaccgggacatagtagctattgcc
aagacagggtctggaaagacactggggtacctaattcctgcttttatacatctgaggaga
tgccacaataatccaatgttgggccctacggtattggttttggcccctactcgcgagctt
gcttcacaaatacaagacgaagtagttaagtttggtcaatcatctagagtttcctgcaca
tgcctatatggtggagcttcaaagggccctcagctaagagaacttgagcgtggagcagat
attgtggtagcaacaccaggacgtcttaatgatgttctggagatgaagaagattagcctc
catcaggtttcattacttgtgcttgatgaagcagaccgcatgcttgacatggggtttgag
ccacaaatacggaagattgtggatgagattcctaatactagacagactctaatgtacact
gccacttggccaaaggaggttacaaaaatagctggggatttactaagagatcctgtccag
gtcaacattggcagcatcgatgaacttgttgccaacaaatccatcactcagtatgtagag
gtggttccgcctatggacaagcagcgacgcctagagcagattcttagagatcaagaaagg
ggctcaaaaatcatcatattttgctcgactaagaagatgtgtgaccagcttgctcgtggt
attggtcgcaattttaatgctgtaagcattcatggtgataaatcgcaggccgaaagagag
aatgttctcaatcagtttcgaactggcagggctccaatattagtagccacagatgttgct
gctcgtggacttgatatcaaagatatcagagtggtaatcaattatgactttccaactggg
atagaggactatgtgcatcgcatagggcgtacaggaagagctggcgctactggtgtctcg
tacacttttctctctgaacaagattggaaatatgctggcgatttggtgaaactcttgcaa
ggtgccaaccagcatgtccctccacagctgcaagacatggctgcacgcagtgcttctgga
ggtccaagaaaccaggctgctgggatgagtcgctgggacgggcctggtggtcgtcgtttt
gaacctggtcctggtggccctgttggttatggtggtgttagggagggtcctggaggtttc
ggtggtcgtgagggcccgggtggatttggtgttcgagaaagcccagccatgtttggtggc
ccggaaggccctgatggcttgggtggccgggctggccctggtggcttcggtggccgggaa
ggccctggtggcttcggtggccatgagagccctggtggctttggtggccgagaacgggag
ggcccaggtggctttggtggcagaaagggcccaggtggctttggtggacgagatggccct
gggtcaggtggttttggtggtagaggggagcgtggatctggtggttttggcagtcgaggc
ggagcaagccctggaggctttggtggacgtggtggcaggcgtgattcttctggttttggt
gggcgtggcaggggtgatttttccggttttggtgggcgtggcaggggtgattctcccggt
tttggtgggcgaggtaggggagatttttctggtgggcgtggtggcagggggcgtggattt
ggcgggaggggacgttctgaccgaggcccacatgactggtttgtctcagatggacgtgga
cgatatgataaccgtcgtggatatggagacaagggcagggatcggagctgcagccgcagc
ccagatagaggccggtcacggggctatgacagaagaactgatagcaggagcattagcaga
agtaggagtcggagcaggagctggtcacgcagtagaagccgcagcgggagctggagccgt
agtcggagccgcagcagcagccggagtcgcagcaggagcaggagccgtgaccatggggca
gcaccggagcgcaggccccgagcaagaactggtttcgatgtgctgcctcctgcaactgga
gcagccggatctgcacctgtccctgtacctggaccagcaccaccacctgttcctgctctc
gcacctgaacaatcactggccgatacatctacaatgtcgccaatgtctccaggtggccta
gtccagccagctgctgctgcaccgttgatatgtggtgggaatgacaacagctttggcggc
acaccggctggccaacctttccaagggactgacgctgcattccccagttttcctgcaggc
gaaacgttcccaggcgcagcagttcagcaggctgctcctgatgtataa
DBGET
integrated database retrieval system
