Miscanthus floridulus: 136490299
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Entry
136490299 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein
KO
K19026
spatacsin
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136490299
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
136490299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
DC_STAMP
Motif
Other DBs
NCBI-GeneID:
136490299
NCBI-ProteinID:
XP_066342863
LinkDB
All DBs
Position
1:complement(39584677..39608196)
Genome browser
AA seq
3098 aa
AA seq
DB search
MSTSRQIDDGPGVLQLCRWTVLQPHLKLSEFREAFISPTRRLFGLLSEHGDLVLATAEVN
PSQVESHRALSDTCTQAVFETLSTIPRVKSLAWGYCSDAFDDSSFNEILVVSSDTSITVH
AFCRSHKSTLAVNSTSDAKELHGEWKEWHPTECAVLEDGESGPKNWFCSFLTTITSSVSN
GKYQARFPMKSLLPNSAEVVSFSIYDITLSFLKFWYSKCSLKTMPETGSESPRSFLSSLP
VAEASCSCQWECLKVLSSSSGYLIGLVLTPNESVSCEAHPSNAECILVAVLELNHWGMQW
NFVADLQDACDGIRPSSKWVDFQLSDVFLACLNTAGFVAIWNVKTGGLATSFSVLQQCRT
DLEMPLRSSMPIVTNLDGGNIPVENFVGRMFKRLVLASYSCLLAVVDEVGVVYVFYADDI
LNFKANVHEIFDLPVMNHFADCFSTWEAAGHEIGSLSFCTNQSIRGSLNLAKLVPEFSGK
TDVVIARPRKRRKYRCNENEVDSWASGFVTTGQMKVGVAYPHTNSSSFLRRIILPPCRSQ
QDVISLSPLGLTRIFKGSIADGNEHVKIFHSELLMYSSFLGKGDIDVGLMDKMLPFQKDS
AFVGDSVVCSCQGYLYLITQYGLSVVLPPVSVSSFSSHGDTIKFWQPGPATGSTCNALNL
LSVDRSETSWKTWQIEVLDRALLYEGPALADRLCWENGWDLKFSRLRWLQLALHYSMIGD
LEQSLNLLAEVNLAEEGVLQLLLASIHRLSSRTGSDNEAAVSSKLMVLAVRFATRMIKCY
GLQKQKTDNNSVKLHEMALLLMVIRSIQSRISAKNQNSVRTGDDKNSLKIGTEVFQNDSL
LPVVVDGVSSGPSGGLDAYDRQESAPVLVPDSNSMLALTPVESSLSALHDIDTNKGTTQI
GRQIIQGNIKEMINRWEMNNFDLKTVVREALQSGRLPLAVLQLQLLRQREFVSNDDSGDA
FSEVHEIGRSIVYDLLMKGETGLAVATLERLGDDVESDLRQLMQGTVRRSLRLQIADEMK
NRGYIRPNEWKMLETITLIERLYPSSSFWDTYFCRENVIRDAAKIVTLPGEDKPVLALHI
CNHPIIECGDVDGAVLGSWVNINDYTKEFSGSNISDGYWACAAVWSDAWDQRTVDRILLD
QPYHIHAHIPWESQFEYFVAHNDAGKVCKLLDMIPSSILSEGIIRVNVDSLQAPANTLSD
LTLPDYSMYICDSEELEPVCMEIPHVKVFRSLCNHESTLYIRMVMQLELAKKHIFMKEYW
QSTTEIIPLLARAGILIKVGSKEECSTTSFASEMPDDAHHQGREGALHKLIIRFCVQYNL
PYLLDLYLDICNLAPEKDCIRLLKETAGDCKWAQWLLFSRMKGHEYEASFSNACWNLSKK
TVSNSSLTAVEIDEMLYTVDDMAERIGEMSALATLMYASAPIQKSICTGSVNRSGSSSQC
TLENLAPCLQQFPTLWKTLFSSCFGQDEYGCLNYSAGNVFGKRSISEYLRWRYSIFSSAG
GDTSLLQMLPCWVPKSIRRLIQLFEQGPFGMQLLSNVPSPEELFTHNVTDYIYNSTGYTE
ANALSLEASIQKSVEEELYSSLEEKDVRVEHHLHRGRALAAFRHLIAKRASQLKSASARQ
VISAQSNVQADVQLMLAPLSQAERSILISVAPLAITNFEDLTLVASCIFLLELCGICANM
LRLDIAALRRISSYYKSVQENKHADLSSQRAPELHVQSHGAGIAPALARALAEDYVQSDH
LHVLEQTQPLMAPKKEQPQHPLIAILQHLEKASLPQLEEDKTCGFWLLTGVGNASLYRSQ
QNEASQHWNLVTEFCQAHHLPLSTKYLALLANDNDWVGFLTEAQIAGFPIEVVIEVAAKE
IRDSRLRTHILTVLKNMMSLRRKASGNIPSGSSYSSFSAVDGNNPMELFCILGVCEKQKN
PGEALLIKAKQMQWSLLAMIASCFPDVTPLSCLSVWLEITAAREMSSIKVDDVSSKIAKN
VGSAVEATNKLPSSGRNVEFRYNRKNPKRRRFLEASQEKLTICFSLDSTCGPDSAATSNP
TNIDDHQEGGKPISVDIDERLASLSNMVAVLCEQQLFLPLLRAFEMFLPSCSLLSFIRTL
QAFSQMRLSEASAHLASFSTRIKDEASHTQLNSSKEVSVIAEWVAVTAVKAADAVLSTCP
SIYEKRCLLQLLSAVDFADGGTSSSYFSRRYWKINLSEPSLCKDGDIYNWNDLMDDASLL
TSLEKDGQWEQARTWARQLESSGIAWESTLDHVTESQAEAMVAEWKEFLWDIPQERAALW
GHCQSLFMRYSFPPFKAGLFFLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSPPVYP
LHLLREIETRVWLLAVESESQSKADGEFATSAVAQNIAVGNSSSIIEQTADVITKIDSNM
SSPHMKVTERNGTRDSLSSQHVQLFESNSEASSTTINNTRAKRRVKTSSPLRRGANDNIE
SRTNELDNNSNSFHSSKIGEQARNLLSEEEFAKMEASLSGWEQNVRPVDMEKAVLSLLEF
GQITAAKQLQQKLSPSYIPEELVLVDVALRIANSSSSGEISLSCFDTQDLSILQSLEVAN
SCNMISPSQVMEILAVKCGEGRGRALIRRIIAIVRTAKLLGLPFSEAFEKQPIELLQLLS
LKAQDSFDEAKFLVETHIMPASSIARILADSFLKGLLAAHRGGYLDAQKEEGPAPLLWRS
SDFLKWAKLCPSESEIGHALMRLVMTGHEVPHACEVELLILSHHFYMSSSCLDGVDVLVT
FAANRVESYVSEGDFSCLARLITGVSNFHSLSFILSILVENGQLELLLQKYSATDTATGT
PASVRGFRMAVITSLKQFNPNDDDALSMVYKHFDMKHEAASLLELRAEQYMNSWLSRYDK
ERRNDELLEAMHHLVETAEVLSTIDAGQRTHRACARASLLSLQIRIPDLMWIGLSETNAR
RIFVEQSRFQEALIVAEAYNINQPIEWAPVFWNQMLKPDLIEQFVAEFVSVLPLQPPMLL
ELARFYRAEVAARGEQSHFSVWLSPGGLPAEWVKHLGRSFRSLLRRTRDMRLRLQLATLA
TGFIDVLDICNRVLDKVPDNAGPLILRKGHGGAYLPLM
NT seq
9297 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatctcgtcagatagatgatggacctggtgtactacagttatgcagatggacg
gtgttacaaccccatctcaaactatcagaatttcgagaggcttttatatctccaacaagg
cgtctttttggactgctctcagaacatggggatcttgtcctggcaactgctgaggtcaac
ccatcacaagttgagtcacatagagctctctcagatacctgtactcaggcagtcttcgaa
acgctttctactattccgagagtgaagtctttggcatggggatactgttctgatgctttt
gatgactcaagttttaatgaaattcttgtggtatctagtgacacttctatcacagtccat
gcattctgccgttctcacaaaagcacactagcagttaattccacgtctgatgctaaagag
ttgcatggggagtggaaagagtggcaccctactgaatgtgcagtgttggaggatggtgag
tcaggtccaaaaaactggttttgttctttcctgactacaatcacttcgtctgtttctaat
ggaaaataccaagccagatttcccatgaaatctttattacctaattcagcagaagtggta
tcctttagcatatatgacattactctctctttcttgaagttttggtatagcaaatgttct
ctgaagactatgccggaaactggcagtgaatcaccacgaagtttccttagttctttacct
gtggctgaagcatcatgcagttgtcagtgggagtgtctaaaagttctgtctagctcttca
ggttatttgatcggcttagttttgactcctaacgaatcagtaagttgtgaggcccatcca
tccaacgcagagtgcattttggttgctgttctggagctaaaccactggggtatgcagtgg
aactttgtggcagaccttcaggatgcatgtgatggtattaggccaagttcaaaatgggtt
gattttcagttatcagatgtgtttcttgcctgccttaatacagcaggttttgttgccatt
tggaacgtgaaaactggtggtcttgcgacgtcattcagtgttcttcaacagtgcagaaca
gacctggagatgcctctgaggagctctatgcccattgtgacaaatttggatgggggaaat
atccctgttgagaactttgttggcagaatgtttaagcggttagttttggcatcatactct
tgtcttcttgctgttgtagatgaggttggagtagtgtatgtgttctatgcggatgacatc
ttaaacttcaaagctaatgtgcatgaaatctttgatctgcctgttatgaatcattttgct
gattgtttttctacctgggaagctgctggtcatgagataggaagtctatcattttgtact
aatcagtccatacgagggtcacttaatctagccaaattggttcctgagttctcagggaaa
accgatgttgttattgccaggcctagaaaaagaagaaagtatagatgcaatgaaaatgaa
gtggacagctgggcaagtggctttgtcactacagggcagatgaaagttggggtagcttat
cctcacacaaattcctctagtttcttaaggaggataattcttcctccatgcagatcacag
caggatgtaattagcctgtctccacttggactaactaggatttttaaaggttctattgcg
gatggaaacgagcatgtcaaaatttttcattccgagttgcttatgtattcatcttttctt
ggcaaaggagatattgatgttggtcttatggacaaaatgcttccatttcagaaggattct
gcttttgttggagattctgttgtttgctcctgccaggggtatctgtatttaattacccag
tatggtctttctgtggtccttcctccggtttctgtatcgtccttttcatctcatggtgac
accatcaaattttggcaaccgggtcctgctactggtagtacatgcaatgctctgaactta
ttatctgttgacagatctgaaacaagctggaaaacctggcaaatagaagttctggataga
gcgttgttgtatgaagggcctgcactagcagacaggctctgttgggagaatggatgggat
ttgaaattctctaggttacggtggctgcaattggcccttcattactcaatgattggtgat
ctagagcagtcactgaatttgctcgctgaggtcaatcttgcggaagaaggtgtcttgcaa
ctgctattggcatctattcatcggttatctagtaggactggaagtgataatgaagctgcg
gtgtcatccaagttaatggttttagctgtccgctttgcaacaagaatgatcaaatgttat
gggctacaaaagcaaaaaacagataataattcagtaaagcttcatgaaatggctctcctt
ttgatggtaataagaagtatccagagccgaatctctgcaaagaatcagaattctgttcgg
acgggagatgataagaactcattgaaaataggtacagaagtatttcagaatgattctttg
cttccagttgtagtggatggtgtttcatcagggccatcaggtggtttagatgcttatgac
aggcaagagtcagctcctgtgttggttcctgatagcaacagcatgttagctctaacacca
gttgagtcatctcttagtgctctccatgacattgatactaataaagggactactcaaatt
ggaagacaaattattcaaggaaatatcaaggagatgattaacagatgggaaatgaataac
tttgacttgaaaactgtagtcagagaagcactgcagtctggtcgcctacctttggcagtt
cttcagttgcagcttttgcgccagagggaatttgtctccaatgatgattcaggagatgct
ttctctgaagttcatgaaattggaagatccattgtgtatgatctgttgatgaagggtgaa
actggattggctgtagcaacactagaaaggctgggagatgatgtagagtcagacctaaga
caacttatgcaaggtactgtcaggaggtcactaaggctacaaattgctgacgagatgaag
aaccgtgggtacataagaccaaatgagtggaagatgctagaaactataacactaattgag
cggctctacccgagcagcagcttctgggacacatatttttgcagggagaatgtcattcgt
gatgctgcaaaaattgttacactgccaggagaagataaacctgtattggctctacatatt
tgcaaccaccccattattgaatgtggtgatgttgatggagcagtgcttggttcttgggtg
aacattaatgattacactaaggagttctctggtagcaacatttctgatggttattgggcc
tgtgctgctgtatggtccgatgcgtgggatcagagaactgtggaccgtatattgctggac
cagccttatcatatacatgctcatatcccatgggaatctcagtttgaatattttgttgct
cataatgatgccgggaaagtctgcaaactcctggacatgattcccagtagcatactttca
gaagggattattagagtaaatgtggacagtttacaagcccctgccaacactctttctgat
ttaacactccctgattacagcatgtacatatgtgactcagaagagcttgaaccagtctgt
atggagataccacatgttaaagtttttagatctttgtgcaatcatgaatcaacgttatat
attcgaatggtaatgcagctggaattggcaaagaaacacatctttatgaaagagtactgg
caaagtactactgaaattatacctttgcttgctcgtgctggcatacttataaaggttggt
tcaaaggaagaatgttctacgacatcttttgcttcagagatgccagatgatgctcatcac
cagggtcgtgaaggtgcactgcataagttaattatacgtttctgtgtgcaatataacttg
ccatatctactggacctctatctggacatctgtaatttggctcctgaaaaggattgtatc
cgtttgctcaaagaaactgcaggtgattgcaagtgggcacaatggttgctcttctccagg
atgaaaggtcatgagtatgaggcatcattctctaatgcctgttggaatttgtcaaagaaa
acggtcagtaatagtagtcttaccgctgttgagatagatgaaatgttgtatacagtagat
gatatggctgaacgaattggtgaaatgtctgcactagctaccttgatgtatgcttcagca
ccaattcagaaatccatatgtactggaagtgtgaacagaagtggttcgtcttcccagtgc
acattggagaacctggctccttgtctccagcaatttccaacgctatggaaaacccttttt
tcttcttgttttggccaagatgaatatgggtgtttaaactactctgctggtaatgtgttt
ggaaaaagatcaatttcagagtacttgagatggcgctatagcattttttcctctgctgga
ggagacacttcgttgttgcaaatgcttccatgttgggtcccaaagtctattagaagatta
attcaattatttgagcagggcccttttggaatgcaacttctatcaaatgtcccatcacct
gaagagttattcactcacaatgtcaccgattatatatacaattccactggatatactgaa
gccaatgcattgtccttagaagcatcgatccaaaaaagtgtcgaagaagaattatattct
tcccttgaggagaaagatgtgagagtggaacaccatttgcaccgtggtcgagccctagct
gctttcaggcatcttattgctaagagggcttcacagttgaaatcagctagtgcacgtcaa
gtgatatccgcacagtctaatgttcaagcagatgtacaattgatgcttgctcctctaagt
caagctgaacgatcaattcttatatcggtggctccactagctattacaaactttgaggac
ttgactctagttgcttcctgtatattcttgttggaactttgtggtatctgtgccaacatg
cttcgtttagatattgctgcactacgacgcatctcttcctactataagtcagttcaagaa
aataaacatgctgatctatcttcacaaagggccccagagcttcatgtgcagtctcatgga
gctggcatagctcctgctctagctcgagcactagctgaagattatgtccaatctgatcat
ctgcatgttttggagcagactcaacctctaatggctcccaagaaggaacagccacaacat
cctcttattgctattctgcagcaccttgaaaaagcaagtttgccacagttggaggaagat
aaaacttgtggattttggcttttaactggtgttggtaatgcgtctctttacagatcgcaa
cagaatgaagcaagtcaacactggaatttggttactgaattctgtcaggcacaccatctc
ccactaagtacaaaatatcttgctttactggccaatgacaatgattgggttggcttttta
acagaagctcagatagctggatttcctattgaagttgttattgaagtggcagccaaagag
atcagggattcaagattgaggactcacatactgactgttctgaaaaatatgatgtcactt
agaaggaaagcatctggtaatataccttcaggaagcagttattcatctttctctgctgtt
gatggcaataatcccatggaacttttctgcattcttggagtctgtgaaaagcaaaaaaac
cctggggaggcactcctgattaaagcaaaacaaatgcagtggtctttgcttgccatgatt
gcttcatgctttccagatgtaactcctctctcatgcttaagtgtttggcttgagattaca
gccgcaagggagatgtcctcgatcaaggtggatgatgtttcttcgaaaatagcaaagaat
gttggatctgctgttgaggccacaaataaattgccaagttctggcagaaatgttgaattt
cgttacaacaggaagaatccaaagcgaagacggttcctggaagcctcacaggaaaagctc
acaatatgtttctcactagatagcacatgtgggccagattctgctgcaacttccaatcct
acaaatattgatgatcatcaggaaggaggaaagccaatctctgttgatattgatgaaagg
cttgcatctttatcaaacatggtagcagtgctttgtgaacaacaactgtttctaccatta
cttagagcttttgaaatgtttttgccttcctgctcccttctttccttcatccgtactctc
caggcattttctcaaatgcgtctgtccgaggcttctgcacatttggcatcgttttcaaca
agaataaaagatgaagcctctcatactcaactaaactcttccaaagaagtgtcagttata
gcagaatgggtggccgttacagctgtaaaagctgcagatgctgtcctctcaacctgtcca
tcaatttatgagaagaggtgtttactgcagcttctttcagcagtggacttcgccgatggt
ggcacttcatcatcttactttagccgaagatattggaagattaatctgtctgaaccttct
ttgtgtaaagatggtgatatctacaactggaatgatttgatggatgatgcttctcttttg
acatcattagaaaaggacggtcaatgggagcaggctcgaacttgggcaagacaactggag
tcaagtggcatagcttgggagtctactcttgaccatgtcactgaatcacaggcagaagcc
atggttgctgaatggaaggagtttctttgggatatcccacaagaacgtgcagccttgtgg
ggtcactgccaatctctctttatgagatattctttccctccttttaaggctggattattt
ttccttaagcatgccgaagcagtaggaaaagagataccagcacaagagcttcatgaaata
ctattgctctctctacaatggctaagtggaactatgactaaatcccctccggtctatcct
cttcatcttttgcgggaaattgagactagggtgtggctcctggctgttgagtcagagagt
caatctaaggctgatggtgaatttgcgacttctgctgttgctcaaaacatagctgttgga
aacagtagcagtattatagaacagactgctgatgtcatcacaaaaatagacagtaatatg
agctcgccgcacatgaaagttacagaaaggaatggcacacgggacagtttatcaagccaa
catgtgcaactctttgagtctaacagcgaagcatcttcaacaacaataaataacacgaga
gcaaagcgaagggtgaaaacaagttcaccacttagacgaggggccaatgacaatattgaa
agtagaactaacgagctggataacaattctaacagttttcatagttcaaagattggagaa
caagctagaaatttactttctgaagaggaatttgcaaaaatggaagcatctttatctggc
tgggaacaaaatgttaggcctgtagatatggagaaggctgtgctctccttactggaattt
gggcaaataactgctgctaagcaactccaacaaaagctgtctccatcatatattcctgaa
gaacttgtccttgttgatgttgctttaagaattgccaatagcagcagtagtggagagatc
agtttgtcatgctttgacacacaggatctttcgatacttcagtcactggaagtagcaaat
agctgcaatatgattagcccatcacaggttatggagatactagctgtgaaatgtggtgag
ggccgtgggcgagctcttattaggagaataatagcaattgttcgaactgctaaattactg
ggactcccattttctgaagcatttgagaaacagccaattgaacttctacagttgctttcc
ctgaaagcccaggattcttttgatgaagcgaaatttctggtggagacacacatcatgcct
gcatctagcattgccagaattctagcagattcgtttctaaaggggcttttagccgcgcat
cgtggaggctatttggatgcccaaaaggaagagggtcctgcacctctattgtggagatca
agtgacttcttaaagtgggcaaaactatgtccatcggaatcagaaattggccatgctttg
atgcgtttggtaatgactggacatgaagtaccacatgcttgcgaggttgaactcctaata
ttgtcgcaccacttctacatgtcatcttcttgtcttgatggagtggatgttctcgtcaca
tttgcagcaaatagagtggagtcatatgtttcagagggggatttttcttgtttagctcgc
ttgatcactggagtgagcaatttccattccttgagcttcattctttcgatccttgtagag
aatggccaattggagttgctgcttcaaaagtactctgccactgacacagccacagggacg
cctgcatcggttcgaggatttaggatggctgttattacatcactgaaacagtttaacccg
aatgatgatgacgctctctctatggtatacaagcactttgacatgaagcatgaggctgct
tctctccttgaattgcgtgcagagcaatacatgaacagctggttatctcgatatgacaag
gaacggcgaaatgatgagcttcttgaggctatgcatcaccttgtagagacagctgaggtt
ctttcaactattgatgctggccaaagaacacatcgtgcttgtgcccgtgcttctcttctg
tcacttcagatccgaatacctgatcttatgtggattggtctttcggagaccaatgcccgg
cgaatttttgtggaacaatctaggttccaggaagctcttattgttgctgaagcatacaac
ataaatcaacctatagaatgggctccagtcttttggaatcaaatgctaaagccggatcta
atcgagcaattcgtggctgagtttgtatcagtgctgcccctgcagccaccaatgcttctc
gagcttgcaaggttttacagggcggaggtggcagccaggggagagcaatcacacttctct
gtctggctttcacctggaggcttgcctgcagagtgggtgaaacatcttggcagatcattc
aggagcctgctgcgtagaacaagggacatgaggctgaggctgcagttggcaactctggcg
acaggcttcattgatgtccttgacatttgcaatagagttttggataaagtcccggacaat
gctggcccactgatcctaaggaagggccatggcggggcataccttcctctcatgtaa
DBGET
integrated database retrieval system
