Miscanthus floridulus: 136491005
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Entry
136491005 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136491005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136491005
03036 Chromosome and associated proteins [BR:
mflo03036
]
136491005
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136491005
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136491005
mRNA degradation factors
5'-3' decay
Decapping complex
136491005
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
136491005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
136491005
NCBI-ProteinID:
XP_066343308
LinkDB
All DBs
Position
11:64256294..64266676
Genome browser
AA seq
506 aa
AA seq
DB search
MDPRARYPPGMGNGRGGNPNYYGRGPPPPQHQHHHQQPPQQHHHQQPRPPSQAHHQQFVQ
RQPQPQHHNQQQQQQWLRRNQIAGEAVGASAQRAPPAADNIDSSSQDWKAQLKLPPPDTR
YRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGT
GKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSL
KDDIIRLYQPVHLLVGTPGRVLDLTKKGICILKECSMLIMDEADKLLSPEFQPSIEQLIR
YLPSNRQVLMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCL
NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC
RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN
LYRIEQELGTEIKPIPPQIDRAIYCQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgggccaggtaccctcccggcatgggaaacggccgcggcgggaaccctaac
tactacggccgcggtccaccgccaccgcagcatcagcatcaccaccaacagccgccgcag
cagcatcaccaccagcagccacggccaccgtcgcaggcgcaccaccagcagttcgtgcag
cgtcagccgcagccgcagcaccacaaccagcagcagcagcagcagtggcttcggcgcaac
cagatcgctggcgaggccgtaggagccagcgcacagagggcgccgcctgccgccgacaac
atcgattcaagttcacaagactggaaggcccaactgaagcttccacctccagatactcgc
tacaggacagaggatgttactgcgaccaagggaaatgaattcgaagactattttctgaaa
cgtgaactacttatgggaatatatgagaaaggatttgaaaggccttcacctatccaagaa
gaaagcattcctattgcattaactggtagtgacattcttgcaagagcaaaaaatggaact
ggcaaaacagctgcattttgtatacctgctctagaaaagattgaccaagacaaaaatgct
atccaagtcgtcatattggtccctacaagggaattggctttgcaaacttcgcaagtctgc
aaagaacttgggaaacacctaaaaattgaagttatggtcactactggcggaaccagccta
aaggatgatatcattcggctttatcaacctgttcatttacttgttgggacacctggtcgc
gttttggaccttacaaagaaaggcatttgcattctgaaagagtgttcaatgcttataatg
gatgaggcggacaagcttctttctcctgagttccaaccttctattgagcagttgattcga
tacctcccatcgaatcgacaggttttgatgttctcagcaacattccctgtgaccgtcaag
gaattcaaggacaaatatcttcctaaaccttatgttataaaccttatggatgaacttacg
cttaagggaattactcagttttatgcttttgttgaagaaaggcagaaagttcattgtctt
aatactctcttttccaagctgcaaattaaccaatcaataatattctgcaactctgtaaat
cgtgttgaacttttggcaaagaagatcaccgagcttggctactcttgcttctacatccat
gctaaaatgcttcaagatcatcgcaatagggtttttcatgatttccgcaacggtgcatgc
aggaaccttgtgtgtacagatctttttacaaggggaatagatatccaagctgtcaatgtt
gtaatcaactttgatttcccgaagaatgcagagacatatcttcacagggttggtagatct
gggaggtttggccaccttggtctggctgtgaatttgatcacctatgaggatcgctttaac
ttgtatcggattgagcaagaacttggaacagagataaaaccaatacctcctcagatagac
cgggctatatactgccagtag
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