Miscanthus floridulus: 136493315
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Entry
136493315 CDS
T10264
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136493315
09124 Replication and repair
03420 Nucleotide excision repair
136493315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136493315
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136493315
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136493315
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136493315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Zn_ribbon_GTF2H2
IBR
IBR_1
Motif
Other DBs
NCBI-GeneID:
136493315
NCBI-ProteinID:
XP_066345485
LinkDB
All DBs
Position
11:67818564..67822860
Genome browser
AA seq
431 aa
AA seq
DB search
MYGVGGGGGGFNAPSTTAGRRRNPGDEEEDEEEEGGEGRVLEAWERAYADERSWESLQED
ESGLLRPMDTKTLVHAQYRRRLLLRSSAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTEIGGSPESQIKALMGKLECSG
DSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTFDPGDIMETITKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYTAANLIKMGFPQRGAE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVTPVPNRIQRGGQICFSCQQSLFNPDGQSNLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQRSIAS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggtgggggcggcttcaacgcgccctccaccactgccggtcgg
cgccgcaacccgggtgacgaagaggaggacgaggaggaggagggcggtgagggccgcgtc
ctggaggcgtgggagcgcgcgtacgcggacgaacggtcgtgggagtcactgcaggaggat
gagtcgggcctcctccgtcccatggacaccaagaccctcgtccacgcgcagtaccgccgg
cgcctcctgctccggtcctccgcggctgccgctgcccgcatccaaaaggggctcatccgc
tacctctacatcgtcatagacctctcccgggcggcttcagagatggattatcgtcctagt
cgaatggctgttgttgcaaagcatgctgaggctttcataagagaattctttgaccagaat
ccgttgagccatgttggtctagtgacaattaaagatggtattgcccatcgacttacagaa
attggagggagcccagagtcacagattaaggctttgatggggaagcttgagtgttctggt
gattcatccctgcagaatgctctagaacttgtgcatggttatttagatcaagtaccatca
tatggtcacaaggaagttctaattttatactctgccctgaatacatttgatcctggtgat
atcatggagacgataacaaaatgtaaaaagtcaaaaattagatgctctgtcattggtctt
gctgcagagatcttcatttgcaaacatctatgtgaagagactggtggatcctacacagtt
gcgctggatgagtctcatttcaaagagttgttactggaacatgctcccccacctcctgca
atagcagaatatactgcagctaatttgattaagatgggctttccacagaggggtgctgag
gatcttatctctatttgctcttgtcacaagaagataaagtctggggctgaaggttacata
tgtcctagatgcaaagttaatgtgtgtgagcttccaactgaatgtcgaacttgtggtctt
acgctagttagttctccacacttggcaaggtcatatcatcatctcttcccggtagcacca
tttgatgaggtcacccctgtcccaaatagaatccaaaggggaggacagatctgtttcagc
tgccagcagagcctttttaacccagatggccagtctaacctccatgttcgctgcccaaaa
tgcaaccagcacttctgccttgattgtgatatttacatccacgagagcttgcacaattgc
cctggttgtgagagccaacgcagcatcgcttcatag
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