KEGG   Miscanthus floridulus: 136493491
Entry
136493491         CDS       T10264                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
mflo  Miscanthus floridulus
Pathway
mflo03030  DNA replication
mflo03410  Base excision repair
mflo03420  Nucleotide excision repair
mflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136493491
   03410 Base excision repair
    136493491
   03420 Nucleotide excision repair
    136493491
   03430 Mismatch repair
    136493491
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mflo03032]
    136493491
   03036 Chromosome and associated proteins [BR:mflo03036]
    136493491
   03400 DNA repair and recombination proteins [BR:mflo03400]
    136493491
DNA replication proteins [BR:mflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    136493491
  DNA Replication Termination Factors
   ELG1-RFC complex
    136493491
Chromosome and associated proteins [BR:mflo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    136493491
DNA repair and recombination proteins [BR:mflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     136493491
  Check point factors
   HRAD17(Rad24)-RFC complex
    136493491
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Mg_chelatase Rad17 AAA_16 AAA_lid_RFC1 Viral_helicase1 RCF1-5-like_lid AAA_5 nSTAND3 RuvB_N AAA_11 AAA_28 AAA_19 AAA_assoc_2 AAA_25 MeaB AAA_30 DNAX_ATPase_lid RNA_helicase AAA_3 ABC_tran IstB_IS21 AAA_24 SLFN-g3_helicase NPHP3_N DNA_pol3_gamma3 NTPase_1 bpMoxR KTI12 AAA_18 DO-GTPase1 DUF6120 DNA_pol3_delta_C
Other DBs
NCBI-GeneID: 136493491
NCBI-ProteinID: XP_066345680
LinkDB
Position
11:78086179..78104791
AA seq 331 aa
MAAASSSADAYDIPWVEKYRPTRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKT
TSILALAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEA
DSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLM
IVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHV
KNMVKMVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKETGFA
HMRICDGVGSFLQLSGLLAKFALVRETAKAP
NT seq 996 nt   +upstreamnt  +downstreamnt
atggccgccgcctcctcctccgccgacgcctacgacatcccgtgggtggagaagtaccgc
cccacccgcgtcgctgacgtcgtcggcaactccgatgccgtcgcccgcctggaggtcatt
gcccgcgatggcaacatgcccaacctcatcctctccgggcctccggggaccgggaagacg
acgagcatcctggcgctggcgcacgagcttctggggcccagctaccgcgaggccgtgcta
gagctcaatgcctcagatgacaggggtttggacgtggtgcggaacaagatcaagatgttt
gcccagaagaaggtcaccctgcagccagggcggcacaaaatcgtgatcttggatgaggct
gacagcatgacatcaggagcacagcaagctttgcgaaggacaatggagatctattcaaac
acaactagatttgcactagcatgcaacacctcatcaaagataattgaacccattcaaagc
cgatgtgctattgtcaggttctcaaggctctctgaccaggagatccttggccgcctcatg
attgttgtggaagctgagaaggttccttatgtgccagaggggctagaagctatcatattt
actgctgatggtgacatgagacaagctttgaacaacctgcaagctacatttagtgggttc
cgctttgtcaatcaagaaaatgtgttcaaggtgtgcgatcaaccacatcccttacatgtc
aagaacatggtaaaaatggtgcttgatggaaagtttgatgaggcctgctctgcactgaag
caactttatgatttgggatactctcctactgacattatcactactctcttccgtgttgtg
aagaattatgacatggctgaatatctgaagctggaaatgctgaaggaaactggatttgca
cacatgagaatctgtgatggtgttggatcatttcttcagctttctggtctacttgccaag
tttgcgctcgtgagggaaactgcaaaagcaccatga

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