Miscanthus floridulus: 136494134
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Entry
136494134 CDS
T10264
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136494134
09124 Replication and repair
03420 Nucleotide excision repair
136494134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136494134
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136494134
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136494134
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136494134
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
136494134
NCBI-ProteinID:
XP_066346379
LinkDB
All DBs
Position
11:97642231..97650268
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AA seq
451 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYASKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL
PREPLPLSVTGRLPTPADLESYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWFIPTQLATNLSASLSDSSSNKEGFVV
VETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFL
RQNAHPRVADKIPVVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDN
GYLLWEDSKRMRLVVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtggcacggaacttcatggatatggtggctgctcttcctgcg
ggcaagctcgatatgctctatgactcagcctttatctgtgaggcggtactcaggtcactt
cccccactggcaaagaagtatgcactgcagatgttgtatgtgctggcaccggtgaccgct
gcagcaatggaagagtgggtgctaaatgaatatgcttccaagcacaaggttgccattgat
aagcttctccaactcagggtctttgtcgaagtgcgcgacagacgacgggacgtgagctac
aagatgaatcagaagttccagggaaacatgcagaagtatttggttgatggtggaagttta
ccaagggaacctttaccattaagtgtcactggtcgattgcccacaccagcagatctggaa
tcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatctcaagtc
gaaaaagggacaagttttagctcctccatgatgaagacatttcagcgtggtctcctgagt
tcaagggatggtgaagcttcaaagttaactgagaatggcttccaatttcttctgatggaa
acaaatgcacaactttggtacataatgagagaatacatttcatctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcttggaacttagctttcataaattgggagcg
gcttatagcttgaatactctgactgatgtccaaaggattgccatcagggatcttgcagaa
ttgggactagtcaaacagcagcagggtcgaacggatcgctggttcattcctacccaactg
gctactaatctctcagcaagcttgtcagattcgtcatctaacaaagagggatttgtggtt
gtggagacaaactttcgaatgtatgcatactctacttccaaactgcactgtgaaattcta
cgccttttttcaagggtggagtatcaacttccaaacctcatcgtaggagctgttacaaaa
gaaagtatctatggtgcttttgagaatggaataactgctgagcagataatttcatttctt
agacaaaatgctcaccctcgtgttgctgacaagatacccgtagtcccggagaatgtcaca
gatcagattaggctgtgggaaactgaccgcaacagggttgagatgattccatcacatctg
tacgaagattttcctagcaaggaatggtttgaacaatgctgtgattatgcaagggataat
gggtacttgctctgggaggactctaagagaatgagactggttgtacgaggggagtttcac
cctgaaatgagggagttcctccgcaggcaaagatga
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