KEGG   Miscanthus floridulus: 136497190
Entry
136497190         CDS       T10264                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mflo  Miscanthus floridulus
Pathway
mflo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136497190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mflo03041]
    136497190
Spliceosome [BR:mflo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    136497190
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_Aladin ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 PRP4 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_SCAP WD_LRWD1 Beta-prop_WDR75_2nd WD40_like Tricorn_2nd Beta-prop_ACSF4 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 136497190
NCBI-ProteinID: XP_066349073
LinkDB
Position
1:146690755..146694633
AA seq 522 aa
MENPRPQPPAPTPPMAPLPVPVHPPIAPIPVPPPRAPAAAAVASMASTSTSSAGGGGEAE
YEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMER
RDRLRALMVRLEADGQVDRLLRAQEDDQAARAGEEEEEQIQYPFFTEGTQELLKARVDIA
QYSLPRAKARIERAKRRHEDPDEDPEAEAELVVKQAGEFVLECSEIGDDRPLTGCSFSRD
ASMLATSSWSGIIKVWSMPQLTKVATLKGHTERATDVAFSPVDDCLATASADRTAKLWKP
DGSLLMSFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVYGV
SFHPDGSLASSCGLDAYARVWDLRSGRLFFALKGHVKPVLGVSFSPNGYLVATGSEDNFC
RIWDLRKRQMLYSIPAHKSLISHVKFEPQEGYYLATCSYDTKAALWSARDYKPIKSLVGH
ESKVTSLDISGDGQKIVTVSHDHTIKIWSCRSSTQDNAMELD
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccccagcccccagcccccacccctcccatggctccgctccccgtc
cccgtccatccgccaatcgcccccatccccgtccctccgccccgcgcgcccgccgccgcc
gccgttgcttccatggcctccacctccacttcctccgccgggggcggaggcgaggccgag
tacgaggtctccgacgaccaccgtgccgcgcgggagcgccacgagcgcgcggtgcaggag
ctcctccagcggcgccgcgcctacgccatggccgtgcccaccaacgactccgccgtgcgg
gcccgcctccgccgcctcggcgagcccatcacgctcttcggcgagcgcgagatggagcgc
cgcgaccgcctccgagccctcatggtccggctcgaggccgatggccaggttgaccgtctc
ctccgcgcgcaggaggacgaccaggccgcgcgcgccggcgaggaggaggaggagcagatc
cagtatcccttcttcaccgagggcacgcaggagcttctcaaggcgcgtgtcgacattgca
cagtactcgctgccccgtgccaaggccaggatcgagagggccaagcgccgccacgaggat
cccgatgaggacccagaggcggaggccgaactcgtcgtgaagcaggctggggagtttgtc
ctcgagtgcagcgagattggagatgatcgccctctcaccggctgttccttctctcgtgat
gcatcaatgctggccacaagttcctggagtggaataatcaaagtatggagcatgccacaa
ttaactaaggttgcaaccctgaaaggtcacacagaacgtgcaactgatgttgccttctct
cctgttgatgactgcttagcaacagcttcagctgatagaactgcaaaattatggaaacca
gatgggtcacttttgatgtcttttgatggccaccttgatcgtcttgctcgccttgctttt
catccatctggaaagtaccttggtacagctagctttgacaagacttggagattgtgggac
atcaatactggaaaggagctgctactccaagaagggcacagcagaagtgtgtatggagtt
agctttcaccctgatggttctttggcatcatcttgtggtcttgatgcatatgctcgagta
tgggatctgagatcaggaagattgttctttgcccttaagggccatgtgaaacctgtccta
ggagtcagcttctctcctaatggttatctggttgcaactggaagtgaagacaatttctgt
cgaatatgggatttgaggaaaaggcaaatgttgtactctataccagctcataagagtctt
atttcacatgtaaaatttgaaccccaagaagggtattatttagcgacttgttcctacgac
accaaagcagcgctgtggtcagctcgggattacaaaccaatcaaaagtttggtgggccac
gagtcaaaggttactagtttggatattagtggagatggacagaagattgtgactgtgtct
catgatcatacaataaaaatttggtcatgcagaagtagcacacaagataatgcaatggag
ttggattga

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