Miscanthus floridulus: 136498002
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Entry
136498002 CDS
T10264
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136498002
09124 Replication and repair
03420 Nucleotide excision repair
136498002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136498002
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136498002
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136498002
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136498002
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
136498002
NCBI-ProteinID:
XP_066350019
LinkDB
All DBs
Position
12:81819765..81830963
Genome browser
AA seq
451 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYAAKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL
PREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLSDIQRIAIRDLAELGLVKQQQGRMDRWFIPTQLATNLSASLSDSSSNKEGFVV
VETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFL
RQNAHPRVADKIPAVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDS
GYLLWEDSKRMRLIVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtggcacggaacttcatggatatggtggctgctcttcctgct
ggcaagcttgatatgctctatgactcagcctttatctgtgaggcggtactcaggtcactt
cccccactggcaaagaagtatgcactgcagatgttgtatgtgctggcaccggtgaccgct
gcagcaatggaagagtgggtgctcaatgaatatgctgccaagcacaaggttgccattgat
aagcttctccaactcagggtctttgtcgaagtgcgcgacaggcgacgggacgtgagctac
aagatgaatcagaagttccagggaaacatgcagaagtatttggttgatggtggaagttta
ccaagggaacctttaccattaagtgtcactggtcgattgcccacgccagcagatctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatcccaagtc
gaaaaagggacaagttttagctcctccatgatgaagacatttcagcgtggtcttctgagt
tcaagggatggtgaagcttcaaagttgactgagaatggcttccaatttcttctgatggaa
acaaatgcacaactttggtacataatgagagaatacatttcatctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcttggaacttagctttcataaattgggagcg
gcttatagcttgaatactctgagtgatatccaaaggattgccatcagggatcttgcagaa
ttgggactagtcaaacagcagcagggtcgaatggatcgctggttcattcctacccaactg
gctactaatctctcagcaagcttgtcagattcatcatctaacaaagagggatttgtggtt
gttgagacaaactttcgaatgtatgcatactctacttccaaactgcactgtgaaattcta
cgcctttttgcaagggtggagtatcaacttccaaacctcatcgtaggagctgttacaaaa
gaaagtatctatggtgcttttgagaatggaataactgctgagcagataatttcatttctt
agacaaaatgctcaccctcgtgttgctgacaagatacctgctgtcccggagaatgtcaca
gatcagattaggctgtgggaaactgaccgcaacagggttgagatgattccatcacatctg
tacgaagattttcctagcaaggaatggtttgaacaatgctgtgattatgcaagggatagt
gggtacttgctctgggaggactctaagagaatgagactgattgtacgaggagagttccac
cctgaaatgagggagttcctccgcaggcaaagatga
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