KEGG   Miscanthus floridulus: 136499172
Entry
136499172         CDS       T10264                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mflo  Miscanthus floridulus
Pathway
mflo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136499172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mflo03041]
    136499172
Spliceosome [BR:mflo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    136499172
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 PRP4 Beta-prop_DCAF4 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_SCAP WD40_like
Other DBs
NCBI-GeneID: 136499172
NCBI-ProteinID: XP_066350972
LinkDB
Position
1:complement(156514879..156518899)
AA seq 522 aa
MENPRPQPPAPTPPMAPLPVPVHPPIAPIPVPPLRAPAAAAVASMASTSTSSAGGGGEAE
YEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMER
RDRLRALMVRLEADGQVDRLLRAQEDDQAARAGEEEEEQIQYPFFTEGTQELLKARVDIA
QYSLPRAKARIERAKRRHEDPDEDPEAEAELVVKQAGEFVLECSEIGDDRPLTGCSFSRD
ASMLATSSWSGIIKVWSMPQLTKVATLKGHTERATDVAFSPVDDCLATASADRTAKLWKP
DGSLLMSFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVYGV
SFHPDGSLAASCGLDAYARVWDLRSGRLFFALKGHVKPVLGVSFSPNGYLVATGSEDNFC
RIWDLRKRQMLYSIPAHKSLISHVKFEPQEGYYLATCSYDTKAALWSARDYKPIKSLVGH
ESKVTSLDISGDGQKTVTVSHDHTIKIWSCRSSTQDNAMELD
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccccagcccccagcccccacccctcccatggctccgctccccgtc
cccgtccacccgccaatcgcccccatccccgtccctccgctccgcgcgcccgccgccgcc
gccgttgcttccatggcctccacctccacttcctccgccgggggcggaggcgaggccgag
tacgaggtctccgacgaccaccgtgccgcgcgggagcgccacgagcgcgcggtgcaggag
ctcctccagcggcgccgcgcctacgccatggccgtgcccaccaacgactccgccgtgcgg
gcccgcctccgccgcctcggcgagcccatcacgctcttcggcgagcgcgagatggagcgc
cgcgaccgcctccgagccctcatggtccggctcgaggccgatggccaggttgaccgtctc
ctccgcgcgcaggaggacgaccaggccgcgcgcgccggcgaggaggaggaggagcagatc
cagtatcccttcttcaccgagggcacgcaggagcttctcaaggcgcgtgtcgacattgca
cagtactcgctgccccgtgccaaggccaggatcgagagggccaagcgccggcacgaggat
cccgatgaggacccagaggcggaggccgaactcgtcgtgaagcaggctggggagtttgtc
ctcgagtgcagcgagattggagatgatcgccctctcaccggctgttccttctctcgtgat
gcatcaatgctggccacaagttcctggagtggaataatcaaagtatggagcatgccacaa
ttaactaaggttgcaaccctgaaaggtcacacagaacgtgcaactgatgttgccttctct
cctgttgatgactgcttagcaacagcttcagctgatagaactgcaaaattatggaaacca
gatgggtcacttttgatgtcttttgatggccaccttgatcgtcttgctcgccttgctttt
catccatctggaaagtaccttggtacagctagctttgacaagacttggagattgtgggac
atcaatactggaaaggagctgctacttcaagaagggcacagcagaagtgtgtatggagtt
agctttcaccctgatggttctttggcagcatcttgtggtcttgatgcatatgctcgagta
tgggatctgagatcaggaagattgttctttgcccttaagggccatgtgaaacctgtccta
ggagtcagcttctctcctaatggttatctggttgcaactggaagtgaagacaatttctgt
cgaatatgggatttgaggaaaaggcaaatgttgtactctataccagctcataagagtctt
atttcacatgtaaaatttgaaccccaagaagggtattatttagcgacttgttcctacgac
accaaagcagcgctgtggtcagctcgggattacaaaccaatcaaaagtttggtgggccat
gagtcaaaggttactagtttggatattagtggagatggacagaagactgtgactgtctct
catgatcatacaataaaaatttggtcatgcagaagtagcacacaagataatgcaatggag
ttggattga

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