Miscanthus floridulus: 136500918
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Entry
136500918 CDS
T10264
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136500918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136500918
Enzymes [BR:
mflo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
136500918
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136500918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
136500918
NCBI-ProteinID:
XP_066352486
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All DBs
Position
13:64129514..64134338
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AA seq
599 aa
AA seq
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MAAPRAAVASAKQVTRQNFAEAVRELGTHLEACDYVAVAAQKTGAPTGWRRALPVDTAET
AYLKAKLAAESFQPLQIAVCPFRLRSSSPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQS
SYLSTMANDGFDFNMCIYDGISYLSRVQESIARQKIFTPCPQQLLPSPSTSVSDSVFVNR
IKSKILHWRKGYADPSKKDDGSLVSSLSRLILGGETYGSRPSMSIDVCSDRQVQLVLEAV
NHISDDLVSIVVPHKAGAARSVRVIFTNSKEDKNLLLMDIQKLEDEQNFKFRGFREVIDL
LSSSQKPIISYNCLNDMTMLHTKFIAPLPPNMHEFICSLKMVFSNVVDISHLWRQIGPLR
KAKNIQAALSYLQRQYFVPIEIEIPQQDGTSSVTKNEQNVLRITKLFAKLSNLLKISPEY
QLQSREQCTTVEEYCNIFYPSCVVEGSDGANFAIESDTTETVSTDNIIFLWGFREKSVKE
LKPYLIGLHQAFSEDFDVKLLDKTCSALIFRDSNTAIQLLKEINSEGPSLNRFFSEGLKA
AGFEVYRKVCRLGLWDSDLAEALEDVSSELGVPTLPECSTSQIYWNSALMLDLKEYLEC
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggctgccccgcgcgccgcggtggcctcggcgaagcaggtaacgaggcagaacttcgcg
gaggccgtgcgggagctggggacccacctggaggcgtgcgactacgtggccgtggcggcg
cagaagaccggcgccccgacggggtggcgccgcgcgctgccggtggacactgcggaaacg
gcgtacctcaaggccaagctcgccgcagagtcctttcagccgctgcagatcgccgtctgc
cccttcaggctgcgcagctcttccccgtctacccttgtggcctacccgtacaattttcac
ttatttcctagagatgaactacagctcggaatgccttcatacagtttctcttgtcaatca
tcttatttatcaactatggctaatgatggttttgatttcaatatgtgcatatatgatggt
atttcttatctatcaagggttcaagaatccatagcaaggcaaaagatctttactccttgt
cctcaacaattgttgccatctccaagcacatcagtttctgattcagttttcgtgaataga
ataaagtctaagatattgcactggcgaaaaggatatgctgacccaagtaaaaaagatgat
ggttctttggttagttcccttagcagattaattttgggtggtgaaacatatggttccagg
cccagtatgagtattgatgtctgcagtgatcggcaagttcaactggtcttggaggcagta
aaccatatctctgatgaccttgtatctatcgttgttccgcacaaagctggagctgctagg
tctgtgcgtgtgatctttactaattcgaaagaggataagaatcttctcctgatggatatc
cagaaattagaagatgaacaaaactttaaattccgtggatttcgagaagttattgatcta
ctatcatcttcacagaagccaatcatatcgtacaattgcttgaatgatatgacaatgctg
cacaccaaattcattgcacctcttccgccaaacatgcatgaatttatatgttccctaaaa
atggtcttctctaatgttgttgatatcagccacctgtggaggcaaattggccctttgaga
aaagcgaagaatatacaagctgctctaagttacttacaaagacagtactttgtgccaatt
gaaatagaaataccacagcaagatggtaccagcagtgtaacaaaaaatgagcaaaatgtt
ctgagaataacaaagttatttgctaaactaagtaatttactgaaaatcagtcctgagtac
caactgcaatctcgtgagcagtgcaccacagttgaagaatattgtaacatcttctatcca
agttgtgtggtcgaaggttctgatggtgctaactttgctattgagtcagacaccacagaa
actgtgagcactgataacatcatcttcttgtggggctttagggaaaaatctgtcaaggag
ttaaaaccttaccttattggcttacatcaagccttctcagaagattttgatgtcaagttg
ttggataagacatgctcagctttgatattccgtgattctaatactgcaattcagttacta
aaagaaataaactcagaaggcccctcgctaaatagattcttctcagaaggtctgaaagct
gcaggttttgaagtgtatagaaaggtctgcaggttaggactttgggattcagatttagcg
gaggccctcgaggatgtttcatctgagctaggtgttccgacacttcctgagtgcagcacc
tctcagatatactggaatagtgcattgatgctggatctgaaggagtatctggaatgctag
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