KEGG   Miscanthus floridulus: 136501113
Entry
136501113         CDS       T10264                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
mflo  Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:mflo03009]
    136501113
Ribosome biogenesis [BR:mflo03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    136501113
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_CAF1B_HIR1 Beta-prop_IP5PC_F Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_LRRK2 Beta-prop_DCAF12 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_VPS8 WDR54 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 136501113
NCBI-ProteinID: XP_066352707
LinkDB
Position
13:44715862..44723968
AA seq 427 aa
MAPPPQPKQLVLAASSADAGVAAWDLRTGAEDIRFRPCASRPRSLASVADRFLASAQALP
AGGNSGIIHFYYLDKPQVAVKSFPAEPIRALIADQEGSYLIGGGSNGNMFLWEVSSGELL
HTWHAHYRAVRCLALYDYLLVSGSEDGSIKVWDLITVLDEQSRLEAQKPYLYSFSQHALP
VTDIACFLGAIAISSSEDRTCKIWSLSEGRMLRSISFPTSIGSVALDPRSHIFYAGGRDG
KIYVTAMGVDLSFHGSDESSILGTLDDHSKAVTSLASSKDGLLLVSGSEDGNVRVWDTRC
QQVTRKFKHSQGPVTNVLIVTPKRVNLPPLQPLHKVCSANGEAERGAVILPRPENDVPIL
GKKTSIFMERYLDELQHGGSSRLFDFGLNAQNGTPNQQGTEWRERYLELQDLFVHEVLHQ
MPSLRNP
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcgccgccgccacaaccaaaacagctggtgctcgccgcatcatctgcggatgcgggc
gtggccgcctgggacctccgcaccggcgcggaggacatccgcttccgcccctgcgcctcc
cgccctcggtcgctcgcctcggtcgctgaccgcttcctcgcctccgctcaggctcttccc
gctggcggcaactccgggatcatccacttctactacttggacaagccgcaagtggccgtc
aagagctttcctgctgagccgatccgcgcacttatcgccgatcaggaggggagctacctc
atcggtggtggcagcaatggcaatatgttcctttgggaggtgtctagtggagagcttctc
cacacatggcatgcgcactatcgtgctgttaggtgcctcgcgctgtatgactatttgctt
gtctcaggatcagaggatgggagtatcaaagtttgggatctcatcacggtgcttgatgag
cagtcaaggctggaggctcagaaaccatatttgtatagtttcagtcagcatgcactgcct
gtaactgatattgcttgttttcttggagcaattgctatatcttcttcagaggatcgaacc
tgcaaaatttggagtttatccgagggtaggatgctaagaagcatttcatttcctactagc
attggttctgtagcactagacccaagaagtcatattttctatgctggtggtagagatgga
aagatatatgttactgctatgggtgttgatctcagttttcatggtagtgacgagtcatct
attctgggcacattggatgaccacagcaaggcagtaacaagcttagcatcaagcaaagat
ggacttctacttgtctctggatctgaggatggtaatgttcgggtgtgggatactagatgt
cagcaagtgacccgaaaattcaaacactcccaaggtccagtaaccaatgttctgatagta
acgccaaaacgagtaaatctgccaccgctacaaccattacacaaagtttgctcagcaaat
ggggaggctgaacggggggcagtaattcttcctcggcctgaaaatgatgttccaattctt
ggaaagaaaacctccatttttatggagcgctacttggatgagcttcagcatggtggttcc
tccaggttatttgattttgggctgaatgctcagaatggcactccaaaccaacagggaaca
gaatggagagagagatacttggagttgcaggatctctttgtacacgaggtcctccatcag
atgccatccttgaggaacccatga

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