Miscanthus floridulus: 136501143
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Entry
136501143 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136501143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136501143
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136501143
Spliceosome [BR:
mflo03041
]
Complex A
U2 snRNP components
U2 related factors
136501143
Complex B
136501143
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
136501143
NCBI-ProteinID:
XP_066352733
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All DBs
Position
13:complement(9271593..9275442)
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AA seq
815 aa
AA seq
DB search
MGAEQQRLDDEMERRRIRVKDWQVKRRELQGATGPEAEAGGGAGAGKKWTLEGDESDEEE
AGTDLGGSSVMDVDCNNGGNGTSGPTDVEEEEIDPLDAFMNTMVLPEVAKLESNPASVDG
VREVAVSTGGKKGLKMAMGRIMQGDDSDSDYGDDGDGVAGLEDEDDEEFMKRVKKTKVEK
LAVVDHSKIDYQPFRKNFYIEAKDIREMTSEEVSIYRKELELKVHGKDVPKPIKTWLQSG
QTSKLLDTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFLLPMLRHVKDQP
PVAPGDGPVGLIVAPTRELVVQIHSDIKKFSKMLGISCVAVYGGSGVAQQISELKRGAEI
VVCTPGRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNTRRDRQTVL
FSATFPRQVEMLARKVLIKPVEIQVGGRSVVNKDITQVVEVRPESERFLRLLELLGKWCD
KGKILVFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKSNICSLLIATSV
AARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEEERYAPDLVKAL
ELSEQTVPEDLKALADRFMAKVKQGTERTHGTGYGGSGFKFNEEEDEARKSTKKAQAREY
GYEEEKSDSDFDEEEVHKAGDDLDVQAVGDPSANDEARLHALEALARIQRHAVPDHYEAE
LEINDFPQYARWRITHKDTLGPIQEGGVAITIRGTYIAQGKVAGANERKLYLFIEGHSES
CVKKAKAELKRVLEDCVNQVPNLPKSAPTKKYSVI
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgggggccgagcagcagcggctcgacgacgagatggagcgccgccgcatccgcgtcaag
gactggcaggtgaagcgccgcgagctgcagggtgccaccgggcccgaggccgaggcgggc
ggcggtgccggggcggggaagaaatggaccttggagggcgacgagtctgacgaggaagag
gctggcacggatttgggcggaagcagtgtcatggatgttgattgcaacaatgggggtaat
ggtaccagtggccctactgatgtagaggaggaagagattgacccgcttgacgcgttcatg
aacaccatggtgctgccggaggtcgctaagctggagagcaatccagcatcagtggacggt
gtaagggaggttgctgtcagtactgggggtaagaaagggttgaagatggcgatggggaga
atcatgcaaggggatgactcagactcggattatggcgatgatggtgatggtgttgctgga
ttggaggatgaggacgatgaggagttcatgaagcgcgtcaagaagacaaaggtggagaag
ctggctgttgtggaccattccaagattgactaccagccgttccggaagaatttctacata
gaggcgaaggacatcagggagatgacatccgaggaagtgtccatttaccggaaggaattg
gagctcaaggtgcacgggaaagatgtgcccaagccaattaagacatggttacagagtggg
cagactagcaagctccttgacaccatcaagaagcttggtttcgagaaacccatgcctata
caagcgcaagcgctgccggtcatcatgagtggccgtgattgcattggtgttgcaaaaact
ggatctggcaaaacacttgcgtttctccttccgatgctcaggcatgtcaaagaccagcca
cctgttgctcctggagatggtcctgttgggctcattgtggctcctacaagggagcttgtg
gtgcagatacactcggacattaagaagttctctaagatgcttggcattagttgtgttgct
gtctatggaggttcaggggttgcccagcagatcagtgaactgaaacgaggtgctgaaatt
gtcgtttgcacaccaggaaggatgatcgatatcctctgtactagcaatgggaaaatcact
aaccttcggagagtgacattcttggtgatggatgaagctgatagaatgttcgacatgggt
tttgagcctcagattactaggataattcaaaacactcggcgagataggcagacagtgctt
ttctcagccacttttccaaggcaggtagagatgctggcgcgcaaggtgctgatcaaaccc
gttgagattcaggtgggtgggaggagtgtggtgaacaaagacatcacacaagtagtcgag
gtgcgaccagaaagtgagaggttcttgaggctgttagagttgcttgggaagtggtgtgat
aaggggaagattcttgtttttgtccacactcaagataaatgcgattctctgcttaaaaac
ttgttccagcatggataccagtgcctgtctctacatggtggtaaagaccaagctgatcgt
gaatcaactgttgctgatttcaagagcaatatctgcagcttgctgattgctactagcgtt
gctgctaggggtttagatgtgaaagaacttgaattggttgtcaattatgatgtccctaac
cactatgaggactatgttcatcgtgttgggcgaacaggccgtgctggtaggaagggctct
gctgtgacttttatttccgaggaagaggagcggtatgcgccagaccttgtgaaggcattg
gagctctctgaacagactgttccagaggacctgaaagccttagctgatcggtttatggca
aaggtgaagcagggaacagagcggacccatggtactggttatggtggaagcggtttcaag
ttcaatgaggaagaggatgaagcgcggaagtccacaaagaaggctcaggcaagggaatat
ggatatgaggaggagaagtcagattcagattttgacgaggaagaggtacataaggcagga
gatgacctggacgtgcaggcggtgggtgatccgagcgcaaatgatgaagctaggcttcat
gctcttgaggctttggcacggatacagcgccatgcggttcctgaccactacgaggctgag
cttgagattaatgatttcccacagtatgctcgctggaggatcactcacaaagacacactg
ggtcctattcaggaaggtggtgttgctatcactataaggggaacatatattgctcaagga
aaagttgctggtgccaatgagcgcaaactgtacctgtttatcgagggccactcagagtct
tgtgtgaagaaggcaaaagcagagttgaaacgtgtccttgaggattgtgtcaaccaggtt
cccaatctacccaaatctgctccaactaaaaaatactcagttatttga
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