Miscanthus floridulus: 136501349
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Entry
136501349 CDS
T10264
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136501349
09124 Replication and repair
03420 Nucleotide excision repair
136501349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136501349
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136501349
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136501349
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136501349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
136501349
NCBI-ProteinID:
XP_066352957
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Position
13:complement(15781013..15790719)
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AA seq
601 aa
AA seq
DB search
MGSMTIGAKYKTTIKDPGTPGILRMNDDRFTFTPNDPRSAMKFNVDFRTIKGHKFNKVEG
NKAALLNLSKEDKAGGYIFEFDNVGNRDLSRDFVARVLGKHQGIVPPRPTVTPENSVASA
ALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLEDEANKRSKQR
PGFKNALVDIKPTTDGRTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMSETRFWEK
YCRAEYLVRTKNTAAATAEAAGDEELAIFLKNDDILAKEAKMKIKRVDPTLDMEADTGDD
YIHLPDHGIHRDGNKETVDADSELARRTLSQDLNRHAAVVLEGRSLGNVESTDPKTLAEA
LVRSKKEPPSTSIVDDANHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPKEYFDSQQAN
ALRSLGGSNDGRKARTCSLSTEEAFHHLMDQMSSIKVNKLNCPIIQSDMALKVLNELNEG
ISRSRRLNLKNPQEGLLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVLYNKVQRV
KEAMTQIYQKLQLIKESAQPDVRHEISRLVKPMTQALDAAFNHDVEQQQKTSKAGNRHNG
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatgacgatcggtgccaagtacaagaccacgatcaaggaccccggcacccca
ggcatcctccgcatgaacgatgataggttcaccttcacccctaatgatccacggtcggct
atgaagttcaatgttgatttccggaccatcaaaggtcacaagttcaacaaagtagagggt
aacaaagcagcattattgaacctttcaaaagaagacaaggctggaggctacatatttgag
tttgacaatgttggtaaccgcgacctatctcgcgactttgtagctagggttttaggcaaa
catcaagggatagtgcctcctagaccaactgtgactcctgaaaactcagttgcttctgct
gctctggaacaactcagtgctgctgaagtggagagacgggtgaaactgttgcgagaagac
agcgaattgcagaaattacataagaagtttgttcttggaaatattctgcaagaatctgaa
ttttgggcaacaagaaagaacttacttgaagatgaagcaaataaaagatcaaaacaaagg
ccaggtttcaagaatgcgctagtagatattaagccaacaactgatggtcggacaaacaaa
gttactttccagatcacacctgagatgatacatcagatttttgcagaaaagcctgctgtc
cgtagagcatatttagattttgttccaaaaaagatgtcagaaacccgattttgggaaaaa
tactgtagagccgagtatctagttaggacaaaaaacactgcagcagcaacagctgaggct
gctggagatgaggaattggctatcttcctgaagaatgatgatatactggccaaggaggca
aagatgaagataaaacgagtcgatccaacattagacatggaggcagacactggagatgat
tacattcatcttccggaccatgggattcaccgtgatggtaacaaagagacagtcgatgct
gacagtgagttggcgaggaggacgctgtctcaggacctgaaccgtcatgcagctgttgtt
cttgaagggagatctcttggtaatgttgagtcgactgatccaaagactttagctgaagcc
cttgtaaggtccaagaaagaaccaccttccacttctattgttgatgatgctaatcatgag
agactagtgaaggtggctagaatgacggagatagaggatctgcaagctccacgaagcctt
ccgtatgcaccactttgtataaaggatcctaaagaatattttgattcccaacaagcaaat
gctctgagatctctaggtggcagcaatgacggaagaaaagctcgtacttgcagcttgagc
actgaagaagcattccatcatttaatggaccaaatgtcttctattaaagttaataagctt
aactgtccgattattcagtctgatatggctcttaaggttcttaatgaattgaacgaaggg
atttctcgttcaaggagacttaacctcaagaatcctcaagaaggtctccttggtcagctg
cctcaacatacacgggatgagcttatggatcattggacggctatccaggaattgctacgg
catttttggtcatcgtatccaataacaagtgcagtcctttataacaaggttcaaagagtt
aaagaagctatgacacagatatatcaaaagttgcagcttataaaggaatcagcacagcct
gatgtaagacatgaaatatctcggctagtaaagcccatgactcaggctttggatgccgcc
ttcaaccacgatgtggaacagcagcagaagacgtccaaggccgggaacaggcacaacggg
ttttga
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