Miscanthus floridulus: 136501960
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Entry
136501960 CDS
T10264
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136501960
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136501960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136501960
NCBI-ProteinID:
XP_066353562
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Position
13:complement(25137809..25159094)
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AA seq
961 aa
AA seq
DB search
MAGAAASPAGGHVVERFRSRLREEAGGGEPGAAAVVRVYAEALRELTFNCKPVITELTII
AGQHAALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFATRLHSVFVD
AYYRVHPNQYTSMRRLFRTWWPVFPSSVLRSIEDDLQFSPSENNRPTTSTNLHQTESLSP
RPSHGIHVNPKYLEAQHKFKQANVAHQSAARDTMQTTDVQEDRINGLTSNSLRGRPSMFQ
KSSLQYADNPDQQEMIRPLAGTIRATSPHLLSTHSSDVNLDGPLVNSRKNLSRSPPLDVF
PMNVSPKRALERLPPSHSVLGPDPRKLPDRNGMLRWALDDGAQRPTMSMLDEEYRKQSAR
ELIDAYGNCQGRDVDERLPKVQCLDPNGMASRSSARNWLTSEEEEYAWEDMSPTLTDRVR
SSLPSFPPGTVRDGFPRANAGLLESDVGRHNFPSQATRSSVDGSPFNLEDRITTASHVDI
STRRYPRNFGVQNGALLEYQNSEHTLNHGNIDTMPAPPWQKPTGLPLQIQAPQHPSVLDR
IPQPANGEMPVKRLDISGTYNGLNVDIPLVEKHRSSPAPAPTEWLPLHHTQSQTLPLIPP
DTKHVRSASDSLEISCFVSQGASSSVFVPWHQYDSLDRKMGTGNLAQPPYQHQDLLPSSQ
QNQGRILGNQAHPHRPTQLHPHPHSHPHHQETFRSFASVSPFQGQGGTATMTPVSVLPTF
SVPPAVPPYGVPSAPGFPMPPLPPGPRPVPLQMGSSSSQVGGPQPFVSGLLSNLMRHGVI
SLEPPSQSQDSVGVDFNVDLKLRNESVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWHV
TKNRNSKNRKQSSRKYFVTTGEWLRAAETVGNDGVPAFVPSDSVPDRKEEKEIAVPADEE
QTACALCQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLERSQLGPIVHAKCRSGPINT
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcggcgtcccccgcggggggccacgttgtggagcggttccgctcgcgg
ctgcgcgaggaagcgggcggcggcgagccgggcgccgccgcggtcgtgcgcgtgtacgcg
gaggcgctccgcgagctcaccttcaactgcaagccggtcatcaccgagctcaccatcatc
gcgggccagcacgccgcgctcgccgccagggggatcgccgacgccgtctgcgcccgcgtc
gccgaggtgccaccggatcagatattaccatctttgtatctgttagatagtattgtgaag
aacataggtggggaatatgtagagcattttgcaactaggttgcacagtgtatttgttgat
gcatactacagagttcatccaaaccagtatacttcaatgaggcgcctttttcgtacctgg
tggccagtgtttccttcttctgtgcttcgcagcattgaggatgaccttcaattttctccc
tcggagaataaccgtcccaccacatcgacaaatctgcatcaaacagagtcgttatctcct
aggccatctcatggcatacatgtaaatcctaaatacctggaagcacaacataagttcaag
caggccaatgtggcgcaccagtcagcagctcgggacactatgcaaacgactgatgtgcag
gaggatcggataaatggattaacatcgaatagtttgcgaggacggccttcaatgtttcag
aaatcttctttacagtatgctgataatcctgatcaacaagagatgattcgaccacttgct
ggaacaataagggcaacatcaccacatctcttgagcacacattcatctgatgtgaatcta
gatgggccattagtcaattcaaggaaaaacctgtccagatcaccacctcttgatgtgttt
cctatgaatgtgtcccccaagagagcgctagagaggctaccaccatctcattctgtattg
ggacctgatcccagaaaattgcctgatcgaaatggcatgttaagatgggctttggacgat
ggtgcacagcggccgacaatgagtatgcttgatgaagagtacaggaagcaaagtgcaagg
gaacttattgatgcatatgggaattgtcaaggccgagatgttgatgaacgacttcctaaa
gtgcagtgcctggatccaaatggtatggctagcagatctagtgcacgaaattggttaact
tcagaggaagaagagtatgcgtgggaggatatgagtccaactttgactgatcgagtcaga
agcagcttgccatcttttcctcctggaaccgtgagagatggatttcctagggcaaatgca
gggctactggaatctgacgttgggaggcataatttcccaagccaagctactagatcatcg
gttgatggttcaccatttaatcttgaagatagaattacaactgcaagtcatgttgacatt
tccacaaggagatatccaagaaattttggtgttcagaatggagctcttttggagtaccag
aattctgaacataccctaaatcatgggaatattgataccatgccagctccaccttggcag
aagcctactggtctgccattgcaaatacaggcacctcaacatccctcagtacttgataga
ataccacagcctgccaatggtgaaatgcctgtcaagaggttggacattagtggcacatac
aatggtttgaatgtagatatacccttggtggagaagcacaggtcatcacctgctcctgct
ccgacagaatggcttcctcttcatcatacccaatcacaaactttaccgctaattccacct
gatacgaaacatgttagaagtgcatcggatagcttagaaattagttgttttgttagccaa
ggagctagttcatcagtatttgttccttggcatcagtatgattccttggatcggaaaatg
ggtaccggtaacttagctcaaccaccttatcagcaccaagatttgttgccatcaagccaa
caaaatcaaggtagaattttgggaaaccaagctcatcctcatcgccccacacagttacat
ccccatccccactcccatcctcaccatcaggagacttttagaagctttgcctctgtatct
ccattccaaggacaaggaggtactgcaaccatgacacctgtttccgttctgccaactttt
tctgtaccacctgctgtgccaccctacggtgtgccatctgcacctgggtttcctatgcca
ccattaccgcctggaccacgacctgtcccactgcagatgggttcctcatcatcacaagtc
ggtggccctcaaccatttgtctctggactgttgagtaaccttatgcgtcatggtgtaatt
tcactggaaccacctagccaatctcaggattctgttggagttgacttcaatgtagacctc
aagttacggaatgagtctgttatcaatgctttgtatcaggatctttcaaggcagtgtaaa
acatgtggccttcgatttaaatgccaagaggagcatcgtgctcacatggactggcatgtt
acaaaaaatagaaattcaaagaaccgtaagcaatcttcacgtaaatattttgtcaccacg
ggggaatggttaagagcagcagaaacagtaggaaacgatggagttcctgcttttgtgccc
tcagactcagtcccagacagaaaggaagagaaagaaattgctgttcctgcggatgaggag
caaacagcctgtgcattatgtcaagagccatttgaagatttctacagtgatgagactgat
gagtggatgtacagaggtgcagtctacatgaatgcgccagatggtaatattgatggtctg
gaaaggtcacagttgggacctattgtccatgctaaatgtcgatctgggcccatcaatact
tcttag
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