Miscanthus floridulus: 136504041
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Entry
136504041 CDS
T10264
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
mflo Miscanthus floridulus
Pathway
mflo03030
DNA replication
mflo03420
Nucleotide excision repair
mflo03430
Mismatch repair
mflo03440
Homologous recombination
mflo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136504041
03420 Nucleotide excision repair
136504041
03430 Mismatch repair
136504041
03440 Homologous recombination
136504041
03460 Fanconi anemia pathway
136504041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mflo03000
]
136504041
03032 DNA replication proteins [BR:
mflo03032
]
136504041
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136504041
Transcription factors [BR:
mflo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136504041
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136504041
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136504041
MMR (mismatch excision repair)
136504041
DSBR (double strand breaks repair)
HR (homologous recombination)
136504041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
136504041
NCBI-ProteinID:
XP_066355026
LinkDB
All DBs
Position
1:complement(180409354..180413016)
Genome browser
AA seq
623 aa
AA seq
DB search
MDAAKSVTPGAVSHILAHPSTGSDGAVPDLVVQVLDLKSIGTGSRFSFIATDGKDKIKAM
LPTNFASEVHSGNLKNLGLIRILDYTCNLVKGNNDKVLIVVKCEFVCQALDAEINGEAKK
EDPPIVLKPKDEGVVVAEQANAPPLVMKPKQEVKSASQIVNEQRGNAAPAARLSMTRRVH
PLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKK
FYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIIEEAEGETFIPQVQYNFVK
IDQLGSYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVLADESGKTVNISLWND
LATMTGQELLDMVDSSPVVAIKSLKISDFQGVSLSTIGKSTLVINPDLPEAQNLKSWYDS
EGKDTSLAPVGAEMGAARAGGLKSMYSDRVFLSHITSDPAMGQEKPVFFSLNAIISHIKP
DQNMWYRACKTCNKKVTEAFGSGYWCEQCQKNDSECSLRYIMVLKVSDPTGEAWVSVFNE
HAEKIIGCSADELDRIRKEEGEDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRS
EAPVDYAAESKYLLEEIAKLTAC
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgccaagtcggtaacgccgggcgccgtgtcccacatcctggcgcacccgtcg
acgggctccgacggcgccgtgccggatctcgtcgtccaggtcctcgacctcaagtccatc
ggcacgggcagccgattcagtttcatagcaaccgacgggaaggataagatcaaggcgatg
ctccccaccaacttcgcgtcggaggtccactccggcaatctgaagaatctcggcctgatc
cgcatcctcgactacacttgcaacctcgtcaaaggcaacaatgacaaagtcttgattgtc
gtcaaatgcgagtttgtgtgccaagcgctcgacgccgagatcaacggcgaggccaagaaa
gaggaccctccaattgtgctgaagcccaaggacgaaggcgtggtcgtggctgagcaagca
aatgctcccccactcgtgatgaagcccaagcaggaggtgaagtccgcgtcccagatcgtg
aatgagcagcgtggaaatgctgctcctgctgcgcgcctttccatgacaaggagggtccat
cctttgatcactctgaacccctaccagggtaactgggtcattaaggtgcgggtcacgagc
aaaggcaacctgagaacctacaggaatgctcgtggagaaggctgtgtcttcaatgtagag
ctcactgatgaggatggcacgcagatccaggccaccatgtttaatgaggctgcaaagaag
ttctatccaatttttgagctgggaaaggtctattatgtctcaaaaggatctcttagaatt
gccaacaagcagttcaagactgtccaaaatgactatgagatgtcactaaacgagaatgct
attattgaagaagcagagggggaaactttcattccgcaagtgcaatacaactttgtcaag
attgatcagctaggatcatatgttggtggcagggagcttgtagatattgttggtgtggtt
cagagtgtatctccaacactcagcgttagaagaaagattgacaatgagacaataccaaag
cgtgacattgttttagcagatgaatctggcaaaactgttaatatttctctctggaatgat
ctcgctactatgactggccaagagcttttggacatggttgacagttctcctgtcgttgcg
ataaagagcctaaaaatatctgatttccaaggtgtgtctctttcaactataggcaaaagt
acgctcgtgattaatccagacctacctgaggctcagaatctgaaatcatggtatgactct
gaaggcaaagatacttcactggcaccagttggtgcagaaatgggtgctgcacgtgctggt
ggcttgaagtctatgtattctgatagagtttttctgtctcacatcaccagtgatcctgct
atgggccaggaaaagcctgttttcttcagtttgaatgccatcataagccacatcaagcct
gaccagaatatgtggtaccgtgcttgcaagacctgcaacaagaaggtgactgaagctttt
ggatctggatactggtgtgagcaatgccaaaagaacgactctgaatgctcactgagatac
atcatggtcctcaaggtctctgatcccactggtgaggcatgggtgtctgtgttcaacgag
catgccgagaagatcattggctgcagtgctgacgagcttgatcggatcaggaaagaggag
ggggaggacagttacgttctcaaactcaaggaagccacctgggttcctcacctgttccgc
gtcagcgtcacgcagcatgaatacatgaacgagaaaaggcagaggatcaccgtgaggagt
gaagcaccggtcgactacgcagctgaatccaagtacctgcttgaagagatcgcgaagctc
actgcttgctag
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