Miscanthus floridulus: 136504358
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Entry
136504358 CDS
T10264
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136504358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136504358
Spliceosome [BR:
mflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136504358
Complex C
U5 SnRNP specific factors
136504358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
TPR_19
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
TPR_CcmH_CycH
PMC2NT
Motif
Other DBs
NCBI-GeneID:
136504358
NCBI-ProteinID:
XP_066355365
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All DBs
Position
14:complement(56347701..56353905)
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AA seq
960 aa
AA seq
DB search
MSGTTPTPTPTPPAPLPPPPAARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPARA
APDLPDRSASAAAAAGPAVGRGRGKPTGEDDGDDDGGDEEKGYDENQKFDEFEGNDAGLF
SNADYDDDDREADAVWESIDQRMDLRRKDRREARLKQEIEKYRASNPKITEQFADLKRKL
ADLSAQEWESIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGT
ETPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEI
SDIKKARLLLKSVTQTNPKHPPGWIAAARLEEIAGKLQVARQLIQRGCEECPKNEDVWLE
ACRLASPDEAKAVIARGVMSIPNSVKLWLQAAKLESSDLNKSRVLRKGLEHIPDSVRLWK
AVVELANEEDARLLLHRAVECCPLHVELWLALARLETYDQARKVLNKAREKLSKEPAIWI
TAAKLEEANENAQSVNKVIERGIRSLQREGMDIDREAWLKEAEAAERAGSVLTCQAIVKN
TIGIGVDDEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHG
TRESLDALLKKAVNYNPRAEVLWLMAAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAA
FKLEFENNEPERARMLLAKARERGGTERVWMKSAIVERELGNVGEERRLLEEGLKLFPSF
FKLWLMLGQMEDRLGNGAKAKEVFENGLKHCPNCIPLWLSLASLEEKISGLSKSRAVLTM
ARKKNSATPELWLVAIRAELRNGNKKEADALLAKALQECPTSGILWAAAIEMAPRPQRKG
KSTDAIKRSDHDPHVIATVAKLFWLDRKVDKARSWLNRAVTLAPDIGDFWALYYKFELQH
GTVDTQKDVLKRCVAAEPKHGEKWQAISKAVENSHLPVEALLKKAVVVVAVEENANLAGA
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcaccaccccgacccctacacccacaccaccagccccgctcccgccgccgccg
gccgctcgccccgcgcggtacgacttcctcaactccaagccgccgcccaactacgtcgcg
gggctcggccgtggcgcgaccggcttcaccacccgctcggacatcgggccggcccgcgcc
gcgcccgacctccccgaccgctccgcctccgccgccgccgccgcgggccccgccgttggc
cgcggccgcgggaagccgaccggcgaggatgacggcgacgacgacggcggcgacgaggag
aagggctacgacgagaaccagaagttcgacgagttcgagggcaacgacgccggcctcttc
tctaacgccgactacgacgacgacgaccgcgaggcggacgccgtgtgggagagcatcgac
cagaggatggacttgcgccgcaaggaccgccgcgaggcgcgcctcaagcaggagatcgag
aagtaccgcgcgtccaaccctaagatcaccgagcagttcgctgatctcaagcggaagctg
gccgatctgtccgcgcaggagtgggagagcataccggagattggggactactcgctgcgc
aacaagaagaagcggttcgagagcttcgtgcccgtgccggacactctgcttgagaaggcc
cggcaggagcaagagcatgtcacggcgcttgaccctaagagccgtgcggctggcggcaca
gagacgccatgggcgcagactcctgtcaccgatctcacagctgtgggcgagggccgtggc
actgtgctctcgctcaagttggataggctgtcagattcagtttctgggctcactgtagtt
gaccccaaagggtatttgacagacctgaaaagtatgaagattactagcgatgctgagatc
tctgacatcaagaaggcgcggctattgctcaagtcggttacgcagacaaaccctaagcac
ccacctggttggattgccgctgctaggcttgaagagattgctggcaagcttcaggttgct
cggcagctcatccagcgtggctgtgaggagtgccccaagaacgaagatgtttggcttgag
gcgtgccgtttggccagtccagatgaggcaaaggctgtaattgcccgtggtgtgatgtca
attccaaattctgtgaagctatggttgcaggcagcaaaattggagagtagtgatctgaat
aagagcagggttttgaggaaagggctggagcacattcctgattcagtccgactatggaag
gctgtagttgagcttgcaaatgaggaggatgcaaggctgttgcttcacagggctgtcgag
tgttgcccgttgcatgttgagctttggcttgcccttgcgaggctggagacctatgaccaa
gcaaggaaagtacttaacaaggcgagggagaagctctccaaggagcctgccatttggatt
acagctgcgaagctagaggaggctaatgagaacgcacaatcagttaacaaggtgattgag
agaggtatcaggtctctacagagagaaggaatggatattgatagggaggcatggttaaag
gaagcagaagccgcggagcgtgctggatctgttttgacttgccaggctattgtgaagaac
actataggcattggtgttgatgatgaggatcggaagcgtacatgggttgctgatgctgag
gaatgcaagaagcgcggttcaattgaaacagcgcgtgccatctatgcacatgcgcttact
gtgttccttactaagaagagtatttggctgaaagcggctcagcttgagaagagccatggg
actagggagtcacttgatgcgctcctcaagaaagctgtcaactacaatccacgagctgag
gtattgtggcttatggctgcaaaggagaaatggttggctggggacgtgcctgctgctcga
gccatccttcaggaagcttatgctgctatccccaattcagaagagatctggctcgctgca
ttcaagctcgagtttgagaacaatgagccagagagagccagaatgctgttggccaaggcc
agggaaagaggagggacagagagggtttggatgaaatctgccattgttgagagggaattg
gggaatgttggtgaggaaaggagattgttggaggaaggtttgaagctattcccttcattc
ttcaaattgtggttaatgcttggacagatggaggaccgacttggtaatggagcgaaggcc
aaggaggtttttgagaatggcctgaagcactgccccaattgtatccctctttggctctct
ctagctagcctagaggagaagattagtggcttgagtaaatcacgtgctgtcctcacaatg
gctagaaagaagaactctgctacacctgaactctggcttgtggcaattcgagctgaattg
aggaatgggaacaaaaaggaagccgatgctctactggccaaggcattacaagagtgtcca
acaagtggtattttgtgggctgcagctattgagatggcaccacgcccacagcgcaaagga
aagagtacagatgctattaagcgaagtgatcatgatccacatgtcattgcaactgtggcc
aaacttttctggcttgacaggaaggttgataaagctaggagttggttgaacagggctgtt
actcttgctcctgatattggtgatttttgggcattgtactacaaatttgaacttcagcat
ggaactgtggacacacaaaaggacgttctcaaaagatgtgttgcagcagaaccaaagcat
ggtgaaaaatggcaagcaatatccaaggctgttgaaaactcacacctgcctgttgaggct
cttctaaagaaagctgttgtggtggttgctgtagaagaaaatgccaatctggcaggagcc
tag
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