Entry |
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Name |
(RefSeq) THO complex subunit 4A-like isoform X1
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KO |
|
Organism |
mflo Miscanthus floridulus
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:mflo00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136506507
09122 Translation
03013 Nucleocytoplasmic transport
136506507
03015 mRNA surveillance pathway
136506507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:mflo03019]
136506507
03041 Spliceosome [BR:mflo03041]
136506507
Messenger RNA biogenesis [BR:mflo03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136506507
TREX complex
136506507
Spliceosome [BR:mflo03041]
Complex C
Other components
EJC/TREX
136506507
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136506507
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
15:complement(1281110..1284190)
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AA seq |
356 aa
MKSPLLSVSNRPPRWGGTGNKRRNRGRGRRKPGRGAEAVAGLGCLVPEKRRPGPTEAMGP
IPTTYIRQQPTHATRLSGVAAHLPPSAALLLLPPPPEKRETESMADALDMSLDDLISKSR
STHQHPGGGRPAYRGGVPAPTASRRRFNTRAAAAPYLRRATFSFKPLVRPMDYAGYRAAQ
PRPPMVSALDEPTKLYISNLDYGVSNDDIKELFSDVGDIKRYSINYDRSGRSKGTAEVVF
SRRSDALAAVKRYNNVQLDGKPMKIEIIGTNIEAPLPPTAIFSFNPPAGNFNLPFKSGPG
RGGAGGWPQSRGGFGGRGGRGQGRGRGRGEGRGEKVSVEDLDADLDKYHAAAMETI |
NT seq |
1071 nt +upstreamnt +downstreamnt
atgaaatctcctctgctctccgtctccaatcggccgccgcgatgggggggaacggggaac
aagaggaggaaccgagggagagggaggaggaagccaggaaggggcgctgaagctgtagct
gggctgggctgcctggttcccgaaaaaagaagaccaggcccaactgaagccatggggccc
attccaacaacatacatcaggcagcagcccacgcacgcaactaggttgtctggcgtcgcg
gctcatctccctccctccgccgccctgctcctactgccgccgccgccggagaagagagag
acagagagcatggccgacgccctcgacatgtctctcgacgacctcatctccaagagcagg
agcacccaccaacaccccggcgggggacgccctgcctacagaggcggagtccccgcaccc
acggcgtcgcgacgccgcttcaacacccgcgctgccgcagcaccttacctccgccgcgca
accttctctttcaagccacttgtgcgacctatggattatgctggatatagggctgcccag
ccccggccgccgatggtgtccgccctcgacgagcccaccaagctctacatctccaacctc
gactacggcgtctcaaacgacgacatcaaggaactcttttctgatgttggtgatatcaag
cgttactctatcaactatgacaggagtggaagatcaaagggaactgcagaggttgtcttc
tctagaaggtctgatgctctagctgccgttaagaggtacaacaatgtgcagcttgatggc
aaacctatgaagattgaaatcattgggacaaacattgaggcgccactgccaccaactgct
atcttctccttcaatccgccagctggaaacttcaatttgcctttcaaaagtgggcctgga
agaggtggtgctggaggatggcctcagagcagaggtggatttggtgggcgtggtgggcgt
gggcaggggcgggggagggggaggggagagggtcgtggtgagaaagtttctgttgaagat
ctggacgcagacttggacaagtaccatgctgcagcaatggaaaccatctaa |