Miscanthus floridulus: 136507413
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Entry
136507413 CDS
T10264
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136507413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136507413
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
136507413
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
136507413
NCBI-ProteinID:
XP_066358243
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Position
1:complement(193513437..193519162)
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AA seq
701 aa
AA seq
DB search
MDEPEGVRGREDAAPGRDAGDAEEAGDGFQLVTHGKKKRAASGQDGGSAGSGAVLGAGSV
RALTKDKGAAPASGAKAKVPFHDPSIPRPQDVYKIIVDNYNPFEHVWLERSQDGTRRVHP
LEKLPVEQFVDRNVPEREPVKPADLEDTPFTLVEDHKGLVELAKKLKGVTEFAVDLEHNQ
YRSFQGLTCLMQISTRTEDFIVDTLKLHIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQR
DFHIYVCNLFDTGQASRVLQMERNSLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYA
REDTHYLLYIYDLMRQRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGL
QEHELDAKQLAVVAALHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKS
KYPYVESNLELIAYTVWNALKYSYAFEGIAEQLKKEWLEQLALKSGQANDEVTPLDADID
RSNFDSSDQSANVSVASGSGAGFMSEAALISSIHLEDKTQTISSVKTSETLSGLIRPVNK
DVLSNNIHQQASQDLRHTLGALKGNLASGGQSNEQAGSNVENFRSSVFPSQQLSGWVKPF
YPNAGMHSDNVWIQTTQMNETMQLGNTPYYTQLPGYSTEVVGSRYEPEGLQMSGYLSGFE
PGIESINQRSTVTGQPPGRHKEGSFQSSVRRQSFPPSSYKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcccgagggcgtgagagggagagaggacgcggcgccgggccgcgatgccggc
gacgccgaggaggccggggacgggttccagctcgtgacgcatggcaagaagaagagggcg
gccagcggccaggacggcgggagtgctggctctggcgccgttctcggcgccgggtcggtg
cgggcgttgaccaaggacaagggagccgcgccggcgtcgggggccaaggccaaggtgccc
ttccacgatccgagcattccccggccgcaggacgtgtacaaaatcatagtggataactac
aacccgttcgagcatgtctggctagagcgcagccaagacggcacccgacgtgttcacccg
ctggaaaaactgcctgttgaacagttcgttgacagaaatgttcctgagagagaaccagtg
aagccagctgatttagaggatacaccatttacactggttgaagatcacaaaggcttagtg
gaattagcgaaaaagttgaagggtgtcactgaatttgctgtagatttggagcataatcaa
tataggtcatttcagggcttgacctgcttgatgcagatttcaacaagaacagaagacttt
attgtggacactcttaagctacacatatacattggtctctatttgcaagaacctttcaaa
gatccaacaaagagaaaggtaatgcatggtgcggatcgtgatataatgtggctccagcgg
gatttccacatctacgtgtgcaatctttttgacacaggacaggcttcaagggtcttacag
atggagagaaacagccttgagcacctattgcttcacttttgtggagtgacagcaaagaag
gaatatcaaaatgccgactggaggtcgaggccacttcctgatgaaatgatcaagtatgct
agagaagatacacactatctgctgtacatatatgacttaatgagacagagactacagagg
gagtcaacattcgaaaatgatcttcttctagaggtccataagcgcagtaatgaaatttgc
ttacagttctatgagaaggagcttctgacagatacatcctatctccacatatacgggttg
caggaacatgaactggatgcaaaacagctggctgttgttgctgctctacatgagtggaga
gatcgtatagctcgtcaggaagatgaaagtactggttatatactgccaaataaggcttta
attgagatagcaaagcagatgcctacagatgttggacatttgaaaagaattgtgaaatct
aaatatccatatgttgagagcaatcttgagctaattgcttacactgtctggaatgcactt
aagtattcttatgcctttgaaggaatagctgagcaactaaaaaaggaatggctggaacag
ttggctttgaaaagtggtcaggccaatgatgaagtgactcctttggatgctgacattgat
aggagtaattttgattcatctgatcagtctgcaaatgtcagtgttgcttctggcagtggg
gctggttttatgagtgaagcagctttgatcagcagcatccacctagaggataaaactcaa
accatatcctcagttaagacctctgagaccttgtcaggcctgatcagaccagtgaataag
gatgtcctgagcaataatatacatcagcaggctagtcaggacctgagacacactttagga
gctctaaaaggaaacttggcatctggaggacagtcaaatgagcaggctgggagcaatgtg
gagaattttagatcttctgtatttccttcccagcagttgtctggttgggtaaaaccattt
tatccaaatgctggaatgcacagtgacaatgtttggattcaaacaactcagatgaatgag
acaatgcagctgggcaacacaccttactacacacagcttccaggatatagcactgaagtt
gtagggagccgttatgaacctgaaggcttgcagatgtccgggtacctgtctggttttgag
cctggcattgagtcaataaaccaaagaagtacagtaacaggacagcctcctggtagacac
aaggaaggaagtttccagagttcggtgagacgacaatctttcccaccttcaagttacaag
aaatga
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