Miscanthus floridulus: 136508789
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Entry
136508789 CDS
T10264
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136508789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136508789
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
136508789
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
136508789
NCBI-ProteinID:
XP_066359662
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All DBs
Position
1:199022542..199031474
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AA seq
934 aa
AA seq
DB search
MLQSKSFVKKTKQGRIQKVVREHYLRDDVYCGFVPCSACAAAAERKLAAAAAAILVVDTN
VVLHQIDLLENPAIEDVVLLSVVLDEVKNKNLSVFNRIKALCTNKARRFYVFANEQHRDT
YVKDMVGESSNDRNDRAIRVAARWYQSHLGESVKVLLITNDRDNKRKAIEEGLNAETVES
YVRSLAQPGLLDLVVVPSSGDVTMEDVEDHRPSKKKVIYNEHKPMSEITSGLRCGIYHQG
KLRVNRYNPFEAYVGSESIGDEIVIRGRSNMNRAFDGDIVAVELLPQDQWHESKSFIADD
DEEEEDVHLVPNSADDAPRNTSSTQSTVGSSAPSVSSRPVGRVVGIIKRNWNSYCGSLEL
MAMPAGSGGVAHALFVSKDRRVPKIRIQTRQLENLVNKRIVVAVDSWDVLSRYPSGHYVR
TIGDIGDKETETEVVLIENDINTRPFSTQVLACLPPLPWTLSPEDLANPNRQDLRPVRVF
SVDPPGCRDIDDALHCTLLPNGNFEVGVHIADVTNFVHPGTPLDEEAAQRGTSVYLVGQR
IDMLPKPLTEDVCSLRADVERLAFSVIWEMTPDADVISTRYTKSVIKSCAAMSYVEAQAR
MDDSRLVDPLTVDLRNLNSLAKIMRQRRCERGALTLASAEVKFEIDSETHDPLDIGIYQI
REANQMIEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTKEMLEPLLRTASSVGLNLDIS
SSKALAESLDNAKSNDPYFNKLIRILATKCMTQAVYFCSGDLTFSEYYHYGLATSLYTHF
TSPIRRYADVVVHRLLASALGIAKLPPIFQDGPQLTGIADNLNYRHRNAQMASRASVELH
THIYFKTRPTDTEARIVKIKANGFIVFVPKFGIEGPIYLTPKGDKGGDWVVDEVHQRVTK
PGTNISYAVLQTVRIHMEVVEPQPHRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaagtcattcgtgaagaagacgaagcaaggccgcatccaaaaggtcgtc
agggagcactacctccgcgacgatgtctactgcggcttcgtcccctgctccgcctgcgcc
gccgccgcggagcgcaagctcgccgccgccgccgccgccatcctcgtcgtcgacaccaac
gtcgtgctccaccagatcgatttgctggagaacccggcgattgaggatgtcgtcctgctg
tcagtggtgctggacgaggtgaagaataagaacctttcggttttcaacaggatcaaggca
ctgtgtaccaacaaagcacggaggttctatgttttcgccaacgagcagcacagggatact
tatgtcaaagacatggttggggagagctctaatgatcgtaatgacagagcaattcgtgtt
gctgctcgttggtaccaaagccatcttggtgagagcgtgaaggttctactgattacaaat
gacagagataacaaaaggaaagctattgaagaaggccttaacgctgagacagttgagtca
tatgtaagatcgcttgcgcagcctggtttgcttgatttggtggttgttccatctagtgga
gatgttaccatggaagatgtagaagatcatagaccatccaagaagaaagtaatctataat
gagcacaaaccaatgtcagaaattacatctggtttgcggtgtggaatctatcatcaaggg
aagcttcgagttaatcgttacaatccatttgaagcttatgttgggagcgagagcattggc
gacgagattgttatccgtggccgctcaaatatgaacagggcctttgatggtgatatagtt
gctgttgagcttttgccacaagatcagtggcatgagtcgaagtcttttatagcagatgat
gatgaagaagaagaagatgtccatctggtccccaatagtgctgatgatgctcctcggaac
accagttccacacaatcaacagttggatcgtcagctccttctgtctctagtcgtccagtt
ggacgtgttgtgggtataatcaagcgaaattggaattcgtactgtgggtccttggagctg
atggctatgcctgctggtagtgggggcgttgctcatgctttatttgtttcaaaagatcga
agagttcctaagatccgaattcaaaccaggcagcttgagaatctcgtgaacaaaagaatt
gttgttgcggttgattcatgggatgttttgtctcgatatccatcaggacactatgtacgc
accattggagatattggtgacaaagaaactgaaacagaggttgtcttaatagagaatgat
atcaacaccaggcctttctctactcaagtccttgcttgtttgccacctttaccttggaca
ttatcaccagaggatctggctaatcctaatagacaagacttgcgcccagtgagagtcttt
agtgtggatccaccaggttgtcgagacattgatgatgcactacattgcacgctacttcca
aatgggaattttgaagttggagtccatattgctgatgtcactaattttgttcaccctggt
acccctcttgacgaggaagctgcgcagaggggcacttctgtttatcttgttgggcagcgg
attgatatgcttccgaagcccctgactgaagatgtttgttcacttcgtgctgatgttgaa
aggttggcattctctgtcatttgggaaatgactcctgatgctgatgtcatatccacaaga
tatacaaagagtgttatcaaatcttgtgctgcaatgtcttatgtcgaagcccaggcaaga
atggatgacagccgtttagttgatccacttactgtagacttgcggaacttaaattcattg
gcaaagatcatgcgacaacgacgttgtgaaagaggagctctgactcttgcttctgcagaa
gtaaaatttgagatcgatagtgaaactcatgatcctcttgacataggaatttatcaaatc
cgcgaggcaaatcaaatgattgaagagtttatgttggctgcgaatgtttctgttgctgag
aagattttgaagcacttccccttatgttcattgctaaggcgtcatcctagcccaacaaaa
gagatgcttgagccattactccgtaccgcctcttctgttggcctcaatctggatatatca
tcctcaaaggcattagctgaatcacttgacaacgcaaagagcaatgacccatacttcaac
aagcttattagaattttggcgactaaatgcatgacacaggcagtttatttctgcagtgga
gatttgaccttttctgagtattaccattatgggcttgcaacttctctttacactcatttc
acctctcccattcgcagatatgcagatgttgttgttcatagactgctagcttcagctcta
ggtattgcaaagctcccaccaatctttcaggatggtccacaacttacaggaatcgctgac
aacctgaattacagacatcgaaatgcccagatggcaagcagagcatcagtggaacttcac
acccacatatatttcaagacaaggccaactgacactgaagctaggatagtaaaaatcaag
gcaaatggtttcatagtatttgtcccaaagttcggcatagaagggcccatctaccttact
ccaaagggagacaaaggtggtgattgggtagtcgacgaggtgcaccagagagtaaccaag
cccggaacaaacatcagctatgctgtcctccagactgtcaggattcatatggaagtagtt
gaacctcagcctcatcgcccaaagctgcaactcaccctcatatga
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