Miscanthus floridulus: 136509874
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Entry
136509874 CDS
T10264
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136509874
03036 Chromosome and associated proteins [BR:
mflo03036
]
136509874
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136509874
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
136509874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
SH2
Tex_N
MRP-S34
Motif
Other DBs
NCBI-GeneID:
136509874
NCBI-ProteinID:
XP_066360551
LinkDB
All DBs
Position
16:101585235..101594691
Genome browser
AA seq
1589 aa
AA seq
DB search
MGRTVLSDEEEDEIEADEEDPRSYRRGRGDMNEHDDDDDDEDDEDGQDEFEKDDFIVDDE
EEEVEGEEEEQKSDDERRRKKKKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFKR
LKKAGRESEMDEHSGFSDGDGTGKKRSGEERVEYSLFGDHHDAAPFEEDFEDDQQAGEGE
EEVGDDEDEMADFIVEEDEIDGNGQVVRRKKFKKKVPRQAAGVSSSALQEAQDIFGDVDE
LLALRKQELEREAANSSELRGTRLEDEFEPFILAEKYMTSKDEQIKENDVPERMQLSEEL
TGYPPTDKTMIEEESLWIHSHLTGDGFLSFFGNERMNKDIDQKDIVNVVTMLHVNKFEIP
FIAMYRKESCPTLLKCLDSDEGNEDNKDNKSDAHKMKWHKLLWAVQTLDRKWLLLQKRKV
ALQLYYEKRFDDEKRRIDDVTRQELNSQLYNSIIEALKDAKSEKEVEDVDAKFNLHFPPG
EVEEEGQFKRPKRKSLYSICHKAGLWEVANQFGRSAEQLGHHLTLTKIPEAGELESGRHS
PEEVAANFTCAMFETPQDVLRGARHMAAVEIGCEPIVRKHVRGIFMNKAVVSTSPTPEGN
TIIDPYHQLSGVKWLREKPLSKFVDAQWLLIQKAEEEKLLKVTVKLPEDAKKKLMSEARE
NYLSDCVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKQWLHMEYGKQLWN
KVTVAPWRKKDADKKDADIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYAGS
ISNRSQGVAEQQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFKIVEDH
PRDVNPQMENLSVVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMIAT
LCGPGKELLSWKLHALEQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFSTLQFI
AGLGPRKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQLIDL
LEDTRIHPESYVLAKNLAKDVYVEDAQHEINEMDDDEQEMAIEHVRADPKMLKRLEIEEY
IKSISEEYRKLETLLDIKEELLSGFSDWRTPYTEPSPEQEFWMLSGETEDTISDGRIVQV
TVRNIQENKIICTFDSGLKAIVMTDNYSDEGFDPESSQLREGDVLTGKIRNVNKNRFMVY
LTCKASEMRRRPFSRGDQDPYYHEQDMTSQTVEDKARKQKELAKKHFKPRMIVHPHFQNL
TAEEAMQFLSDKEHGEKVIRPSSRGPSFLTLTLKIFDGVYAHKEITESGKDHKDITRLLR
LGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDEMLRAEKAENPM
RILYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKRDFDNIDRLVSYFQKNID
KPPPDAGPSMRNVAAMVPMKNSAWGSGGGGGDANGGWRGDGSNDRDRPFSGRSGGRFDSR
NSSGGRGRGRGRGRGNFGNDDNGGGGWSGGGGGGGNSGGWTDNIGSGGGGWGTGGSGGSS
WGGGGTGGGSDAAGWGGAGDDSNRGGGGG
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacggtgctctccgatgaagaagaagatgagattgaggccgacgaggaggat
ccgcggtcctaccggaggggcaggggcgatatgaacgagcacgacgatgatgacgatgat
gaagacgacgaggatggtcaggatgaatttgagaaggatgacttcatagtggacgatgag
gaagaagaagtggaaggagaggaagaggaacagaagagtgatgatgagaggcgaagaaag
aaaaagaaaaagaagagggaatcagaggatttcatgcttgatgaggatgactatatgttg
ctccaggataataacatcactggcatcagtcgcccaaagcctggaaacaagtttaagcgc
ttgaaaaaggctggaagggaatctgaaatggatgagcactctggtttttcagacggtgat
ggaacagggaaaaaacgcagtggcgaggagagagtcgagtacagtttatttggtgatcat
catgatgctgcaccatttgaggaggacttcgaggatgatcagcaggcaggggagggtgag
gaggaagttggtgatgatgaagatgaaatggcagatttcattgtggaggaagatgaaatc
gatgggaatggacaagttgtaaggaggaagaaatttaaaaagaaggtaccacgacaagca
gcaggtgtatcgtcatctgctctgcaagaggcccaagacatatttggtgatgttgatgag
ctgctagcactaagaaagcaagagcttgagagggaggctgctaactccagtgagttaaga
gggacgaggcttgaagatgagtttgagccatttattcttgcagagaagtatatgacatca
aaagatgagcaaataaaagaaaatgatgtcccggagaggatgcagttgtctgaagagttg
actgggtatcctccaacggataaaacgatgattgaggaagagagtttatggatacacagc
cacctaactggtgatggatttctgtccttttttggcaatgagcgcatgaacaaggatatt
gaccagaaggacattgttaacgtcgtgaccatgttgcatgtcaacaaatttgaaattccg
ttcattgcaatgtacagaaaagagagttgtccaaccctattaaaatgcctcgattctgat
gagggtaatgaggataataaggataataaatctgatgcacacaaaatgaagtggcataag
ttgctctgggcagttcagaccttagacagaaagtggctacttcttcagaagcgcaaggtt
gctttacagttgtattatgagaaaagatttgatgatgagaaacggaggatagatgatgtc
acaaggcaagaacttaatagccaactttataattccatcattgaagcactaaaggatgct
aaatctgagaaagaggtggaggatgttgatgcaaaattcaatttacattttcctcctggt
gaagtagaagaagaaggccaatttaaacgtcctaaaaggaaatccttgtacagtatctgt
cacaaggcagggttatgggaggttgccaaccaatttgggcgcagtgctgagcaattaggc
caccatctgacattaactaagatacctgaagcaggcgagcttgagagcggtagacattct
cctgaagaggttgctgcaaatttcacatgtgcaatgtttgaaacaccacaagatgttctt
cggggcgcgaggcacatggcagcagttgagataggttgtgagccaattgtgagaaagcat
gttcgaggcatcttcatgaataaagcagttgtgtcaacaagtcccacacctgagggcaat
acaatcatagatccatatcatcagctatcgggtgttaagtggttgagagagaaaccactt
agcaagtttgtagatgcacagtggcttcttattcagaaagcagaggaagaaaagctcctc
aaggttaccgtaaaattgccagaagatgcaaagaaaaaactcatgtctgaagcacgtgag
aattatctaagtgattgtgtcagcaagtctgcacaactgtgggatgagcaacggaagatg
atactggatgatgccttcttcaatttccttcttccatcaatggaaaaggaagctcgatca
ctgttgacggcaaaagccaaacaatggctccatatggaatatgggaaacagttgtggaac
aaggttactgttgctccttggaggaagaaagatgcagacaagaaggatgctgacattgat
ttggatgatgaatcggaattgagagttatggcctgctgctggggtcctgggaagccagca
accacttttgttatgttagactcctcaggagagttggttgatgttctgtatgcgggttct
atcagtaacaggtctcaaggtgtcgctgagcagcagcggaagaagaatgaccagcaacga
gtcttaaagtttatgactgatcatcagccacatgttgtgtgtgtaggagcatcaaactac
aattgcagacaactgaaggatgatatttatgaggttatttttaaaattgtagaggaccat
ccaagagacgttaacccccaaatggaaaatttgagcgttgtctatggtgacgagtctgtg
cctcgcttgtatgagaactctcgaatatcttcggatcaacttcctgggcagtcaggtatt
gtgaagcgggctgtagcgcttggacgctaccttcagaatccattggcgatgattgcaaca
ctgtgtggacctgggaaagagctactttcttggaaactgcatgcactggaacagtttctg
actcctgatgagaagtatgaagttgttgagcaagtaatggttgatgcaacgaatcagata
ggttttgacgttaatcttgctgctagccatgagtggcatttttctactctacaatttatt
gctggtttgggtccgcgcaaagcttctgctttgcagaaagatctggtgagagagggatcc
atttttagtcgcaaggagcttgtcaaacctctagggaggaaagtcttcatgaatgcttct
gggtttttacgtgttcggcggagtggtgcagctgcagccagtgctcaactcattgatctg
ctcgaggatacaaggatccatcctgaatcatatgtattagcaaaaaatttggctaaggat
gtctatgttgaggatgcacagcatgaaataaatgaaatggatgatgacgagcaagagatg
gcgattgagcatgttagagcagacccaaaaatgcttaaacgtcttgaaatagaggaatat
ataaagagcatttcagaagaataccgtaaattggaaactctgttggatataaaggaagag
ctgctgtctggtttttctgactggaggaccccctatactgagccaagcccagaacaggaa
ttctggatgctttctggtgaaactgaggataccatatctgatggaaggattgttcaagta
actgtgcgcaatatacaagagaacaaaataatttgcacctttgattctggtttgaaagcc
atagttatgaccgacaactattctgacgagggttttgatccagaatcatcacagttacgt
gaaggtgatgtattaactggtaaaattcgaaacgtgaataaaaataggttcatggtttac
ctaacgtgcaaggcgagtgagatgaggagaaggccattctccagaggtgatcaggatcct
tattatcacgaacaagacatgacctcacaaacggtagaagataaggctcggaaacaaaag
gaacttgcaaagaagcatttcaagccccgaatgattgttcatccccactttcagaacctg
acagccgaagaggccatgcagtttttgtcagataaagagcatggtgagaaggtgatccgg
ccaagttccaggggaccatcttttttgacacttaccctgaaaatttttgatggcgtctat
gcacacaaggagataaccgaaagtggaaaagatcacaaagatatcacaaggttgcttcgc
ctagggaaaacactaacaattgacaatgaaacttttgaagacctcgatgaggtcattgac
agatatgtggacccattggtaggacacctgaagagcatgctctcttatcgtaaattcaga
aagggtttaaaaaatgaggttgatgagatgttaagggcagagaaagcagagaaccctatg
agaatactgtatagttttggcatctctcacgaacatcctggcacctttatattgacatat
attaggagtacaaatccacatcacgagtatattggattatacccgaagggcttcagattc
aggaagagagactttgacaacattgaccgccttgtgtcctatttccagaagaatattgac
aaaccaccacctgatgctggaccatcaatgcgaaatgttgctgcaatggtacctatgaaa
aactcagcttggggttctggtggtggtggtggggatgcaaacggtggttggaggggagat
ggtagtaatgatagggacagacctttctctggcagatcaggagggaggtttgattcaagg
aatagctctggtggtcgtggacgaggacgggggcgtggccggggtaactttggcaatgat
gataatggtggtggaggttggagtggaggaggtggtggtggcggcaacagtggagggtgg
accgataacattggcagtggcggaggcggatggggcacgggtggcagtggtggctcttcc
tggggtggtggtggtactggtggaggatctgatgctgctggctggggtggagctggcgat
gacagcaaccgtggcggtggaggtggctga
DBGET
integrated database retrieval system
