Miscanthus floridulus: 136511427
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Entry
136511427 CDS
T10264
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136511427
09122 Translation
03013 Nucleocytoplasmic transport
136511427
03015 mRNA surveillance pathway
136511427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136511427
03041 Spliceosome [BR:
mflo03041
]
136511427
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136511427
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136511427
Spliceosome [BR:
mflo03041
]
Complex C
Other components
EJC/TREX
136511427
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136511427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
136511427
NCBI-ProteinID:
XP_066361586
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All DBs
Position
16:119793968..119804541
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AA seq
506 aa
AA seq
DB search
MKCSDEVLRCVFSLAPNRGAETLVPRRSRYPTLSCPPPPVASSPTPKPRTSNPNNSFCAV
AAPIPHLLHPLRSTDPYMMVEAKENDVYEEELLDYEEDDDKTVDGSAGKPTGEVAKKGYV
GIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV
LSSLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLSEVKVAVFYGGVHIRKHKDL
LKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPH
DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLND
LLDALDFNQVVIFVKSVSRAAELNKLLCECNFPSISIHSGMTQEERLTRYKNFKEGHKRI
LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVL
NQVQERFEVDIKELPEQIDTSTYMPS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgctcggacgaggtgcttcgttgcgtcttcagtttggccccaaatcgtggagcg
gaaaccctagtcccccgccgcagccggtacccaaccctatcctgtccgccgccgcccgtc
gcctcctcccccaccccaaaacccagaacctctaatcctaataattctttctgtgcagtc
gccgccccaatcccccacctacttcacccgctccgctcgacagatccatacatgatggta
gaggccaaggagaacgacgtctacgaagaggagctcctggactacgaggaggacgatgac
aagacggtcgatggctccgccggtaagcccaccggagaggtcgcgaagaagggctacgtc
gggatccacagttccggtttcagagacttcctgctcaagccagagctgcttcgtgctatc
caggattgcggttttgagcatccttccgaagtgcaacacgagtgcatccctcaagccatt
cttggaatggatgtcatctgtcaagctaaatctgggatggggaaaactgctgtttttgtc
ctttcatccctccaacaaattgaccctgttgcgggtcaggtagcagcacttgttctgtgc
cacactagggaactggcttaccagatatgtcatgaatttgagaggttcagcaaatatctc
agtgaagttaaagttgctgtcttctatggaggtgttcacatcaggaagcataaagatttg
ttgaagaatgaatgccctcatattgtggtcggcacgcctggaaggatacttgctcttgcc
agggataaggatctctccttgaagaatgtgaggcacttcattcttgatgaatgtgacaag
atgctcgagtcacttgacatgcggaaagatgttcaggagatcttcaaaatgactcctcat
gataagcaagtcatgatgttttcagcaacgctcagcaaggagatccgtcctgtatgcaag
aaatttatgcaagatccgatggaaatatatgttgatgatgaggcaaagttgaccctccat
ggtcttgtacagcactatataaaacttagcgaggctgagaagaaccggaaactgaatgat
ctcttggacgctcttgatttcaaccaagttgtgatatttgtgaagagtgttagcagagct
gccgaactgaataagttgctttgtgagtgcaacttcccatcaatcagcattcattctgga
atgacccaggaagaaaggctaaccagatataagaactttaaggaaggccacaagagaatt
cttgtggctacagatttagttggcaggggcattgacattgagcgtgtcaacattgtgata
aactatgacatgccagactcagctgatacttatttgcacagggttggaagggctggccgt
tttggcacaaagggacttgcaattacctttgtttcctctgcttcggattctgacgttctt
aaccaagtgcaagaaaggtttgaggtagacataaaggaactgcctgagcaaattgacact
tccacctacatgccatcgtaa
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