Miscanthus floridulus: 136512002
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Entry
136512002 CDS
T10264
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
mflo03420
Nucleotide excision repair
Brite
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136512002
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
136512002
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
136512002
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
136512002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136512002
NCBI-ProteinID:
XP_066362109
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Position
16:complement(26139930..26145003)
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AA seq
758 aa
AA seq
DB search
MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANQARPLRLIYCTRTVHEMEKTLAELRLLFAHLPPPAARSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASFMPPGVYTL
ADLRALGRERRVCPYFLARQMVKYANIVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLDTENVENEMPVSF
VASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQNMAQDGMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcctgcccgtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggggagctgaagcgcgccctggacgcgcgcgggcacgcgctgctg
gagatgcccacgggcacgggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcgccaaccaggcccgcccgctccgcctcatctactgcacccgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctcccgccgcccgccgcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgcggcgcgggactccgtcgacaccgcctgccggcgcctcacggcctcctgggtc
cgcgagaaggccgcctccgacccggaatccaccccgctgtgcgagttctacgagacgttc
gaccgggccgctgccgccggcgacctcgcctccttcatgccgcctggggtgtacaccctg
gccgacctccgagcgctcgggagggagcgccgggtctgcccctacttcctcgccaggcag
atggttaagtacgccaatattgtggtgtacagctaccagtacctgctcgaccccaaggtg
gccagcattgtgtccagggagatgcagaaggagtgtgtggtcgtcttcgatgaggctcac
aacatcgacaatgtctgcatagaggcgctgagtgtcagcatccgcaaacagacgctggaa
ggtgctgagcgaaatctgcggcgcatctcccaagagatcgacaggtttaaggccaccgat
gccaataggcttcgtgctgaatacaacagactggtggatggactggcgcagagaggaaat
ctaccaatatcggatgcctggctcgcgaatccggctttgcctgatgatattctgaaggaa
gctgttcctggaaacataaggagggctgaacactttcttgctgtcttgcggaggcttgtg
agattccttgatggccggcttgataccgaaaacgttgagaatgaaatgcctgtttccttt
gttgcttcaatccattcccaggctggaatcgaccaaaaaatgctaaggttttgttatgac
cggctacactccctaatgatgacattagagataactgatacagatgagttcatgcacata
cagaccatatgtgactttgccacactgattggaacttatacacgtggcttttctattata
atagagccatatgatgagagaatgcctgatattcgtgatcctgttattcagctgagttgc
catgatgcttcactcgcaataagacctgtttttgatcgttttgaaacggttgtgatcact
tctggaactctcagcccaatagatctttatcctcgtctcttgaattttaatcctgtcata
agcagaagcttcacaatgtccttaacaagagattgtatttgtcccatggtcttgactcga
ggaagtgaccagctacctgtgagtacaaagtttgatatgcgtagtgatcctggtgttgtg
aggaattatggccgcctcttgctagaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttattcctatatggatggcattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaacataaattagtgttcatcgaaacaccagatgtcgttgagaca
acattggctctcgataactacagaaaggcatgtgattgtggaagaggtgccattttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgatcgtcactatggcagatta
gttatcatgtttggtgttcctttccagtacactctgagccggatattgcttgctaggttg
gagtacctccgggaaactttccagataaaggagggtgacttcctaacatttgatgctttg
aggcaagcagcccaatgtgttggccgtgtgattcgctccaaagctgattatgggatgatg
atatttgctgacaagagatacagtcggcatgataaacggtctaagttgcctgggtggata
ctctcgcatttgcatgatgcgcacctaaatctgagcactgatatggctctccatatagct
cgtgagtttctccggaggatggcacagccatatgacaagacgggaagcggtggcaagaag
acgctgttgactgaggaggatctgcagaatatggcgcaggacggcatggagatgtaa
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