Miscanthus floridulus: 136512027
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Entry
136512027 CDS
T10264
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
mflo Miscanthus floridulus
Pathway
mflo03030
DNA replication
mflo03420
Nucleotide excision repair
mflo03430
Mismatch repair
mflo03440
Homologous recombination
mflo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136512027
03420 Nucleotide excision repair
136512027
03430 Mismatch repair
136512027
03440 Homologous recombination
136512027
03460 Fanconi anemia pathway
136512027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mflo03000
]
136512027
03032 DNA replication proteins [BR:
mflo03032
]
136512027
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136512027
Transcription factors [BR:
mflo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136512027
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136512027
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136512027
MMR (mismatch excision repair)
136512027
DSBR (double strand breaks repair)
HR (homologous recombination)
136512027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
zf-CCHC_2
DUF936
COE1_DBD
Fer4_9
Motif
Other DBs
NCBI-GeneID:
136512027
NCBI-ProteinID:
XP_066362133
LinkDB
All DBs
Position
16:complement(12785899..12790055)
Genome browser
AA seq
915 aa
AA seq
DB search
MAAQPTPGAVAAISEHADGGNGTLQPVLQVVDVRIVSNVKSPTNHERFRMLLSDGVHTMQ
SMLATAENVLIHNGSIQKGSIIHLHEFTCSTIQNHRIIIIIKLDVLQSECAIIGDPKAYD
VRIQPNEQGTNFAANAAQANTGTYSSGPGMLGSSAAPRPLQDANNVPYGSSAAPRPVQDA
NNVPYGSSAAPRPVQDANNVPYGGSYGGYQGTVGPPIGRAVESVSNVASGVSYGTTSAHN
NTMNVGMVQSNLQQPSLNSHQNRRFAVPSMAGGSGAPGNTYGQPAQSFYQQPPPGHMNRT
PVSKNDASRLVPVAHLNPYQNTWTIKARVTAKTDLRHYNNNKGAGKVFSFDLLDGQGGEI
RATCFNAQADQFFDLIEVDKVYLISKGSVKPARKLFNSLNHEYEITLDFKSSIEVCVDDD
SNIPRQQYNFRQISEIENLEAGAIVDLIGIVTSVGPSATIIRKVGGSEAQKRTLQLKDMS
GQSVEITLWGKFCDAEGQQLQLQCDSGLNPVLALKGARVTEFSGRSVNTIGSTQLKIDPD
FPEAESLRRWYATEGKTAACVSLSGVSMGRTDVRKAVAQIKDEDLGRSEKPDFITVKGAI
SHLITDNFCYPACTMEVNGRVCNKKVINNGDGTWQCDKCDQSLPKCEYRYLLQCQIQDHT
GVTYATAFQEAGIEIVGHSAYELYNIREEDPERFAEILQGVRWHQFLFKLKVKEETFNDE
QRVKCSITRAEKLDPAKESSYLLGVINGLLQDDTGSPSVAQGAMAYNAGLSNTGAGRSVP
TSNSAYTTNMSGPMYGESVNQFAQQAKTYIGAPTPVSVTGNVQTCMSCGSSGHNAQNCPA
GMYRQQPGVKTASSYGSSQPRNAGPRPCFKCNQIGHFASSCPLLAPAPQQQQYRSGGALS
GGYGQQQPYLGATNY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccagccgacgcccggcgcggtggcggcgatctcggagcacgccgacggcggc
aacgggacgctgcagccggtgctgcaggtggtggacgtgcgcatagtctccaacgtcaag
agccctaccaaccacgagcgcttccggatgctgctctccgacggcgtccacacgatgcag
tccatgctcgccaccgccgagaacgtgctcatccacaacggctccatccagaagggctcc
atcatccacctccacgagttcacctgcagcaccatccagaaccacaggatcattattatt
atcaaacttgatgttctgcaaagcgagtgcgccataattggagaccccaaagcctatgat
gtgagaatccaacctaatgagcagggcaccaactttgcggcaaatgctgctcaagctaat
accggaacatattccagcggccctggtatgctgggatcttctgctgccccaaggccattg
caagatgctaataatgtaccatacggatcttctgctgctccaaggccagtgcaagatgct
aacaatgtaccatacggatcttctgctgctccaaggccagtgcaagatgctaataatgta
ccatacggtggatcctatggtggttatcaaggtacggtgggccctccaattggtcgtgca
gtagaatctgtttccaatgtggcatctggtgtctcatatggtacaacttcagcacataat
aatacaatgaatgtgggcatggtgcagtcaaacttgcagcagccttcactgaactctcac
cagaaccgaaggtttgcagttccttccatggctggtggcagtggtgctcctgggaataca
tacggccaacctgcacagtccttttatcagcaaccgcctccagggcatatgaatagaacc
cctgtgtctaagaatgatgcaagtcgtcttgtcccagtggctcatttgaacccctaccaa
aacacatggacaatcaaggctagggtgactgcaaagactgatctcaggcactacaacaac
aacaaaggtgctggaaaagtcttctcctttgatctccttgatggacagggtggagaaatc
cgtgcaacatgcttcaatgcgcaggctgatcagttttttgacctcattgaggttgataag
gtgtacctgatatctaaagggtcggtgaaacctgcacggaagctgtttaactctttgaac
cacgagtatgaaataactctggatttcaaatcatctatcgaagtttgtgttgatgatgat
agcaacatccctaggcagcagtataatttccggcagataagcgaaattgagaatcttgag
gcaggtgctattgtggacttgattggaattgttacatcagttggcccttctgccacaata
atccgaaaggttggtggctcggaagcccagaaaagaactcttcaactgaaagacatgtct
ggtcaaagcgtagaaattaccttatgggggaagttctgtgatgctgaaggccagcagctg
cagttgcagtgcgattctggtttgaatcctgttctagctttgaaaggtgcccgggttact
gaattcagtggtagatctgtgaacacaatcggctcaactcagttaaaaatagacccagac
tttcctgaggctgagagtctgcggcgatggtatgcaactgaagggaagacagctgcttgt
gtttctttgtcaggggtaagtatgggcaggactgatgtcaggaaagcagtggcccagatc
aaggatgaagatctggggcgatcagagaagccagactttatcactgttaaaggtgcaatt
tcacatctgatcactgataatttttgttatcctgcttgcaccatggaggtgaatggtagg
gtgtgcaacaaaaaggtaataaataatggtgatgggacatggcaatgtgacaaatgtgac
cagagcttaccaaaatgcgagtatagatacttgctgcagtgccagatccaggaccacact
ggggtcacctatgctactgcattccaagaggctggtatcgagatcgttggccacagtgcc
tacgagctctacaacataagagaagaagacccagaacgatttgctgagatcttacagggg
gttcgctggcaccagtttctcttcaagctgaaagtcaaggaagagacctttaacgatgag
cagcgtgtcaagtgcagcattacgagagcggagaagctggatccagcaaaagagagttct
taccttctgggggtaatcaatggcctattgcaggatgatactggctcaccttctgtggcg
caaggcgccatggcctataatgctggtctcagcaacactggcgctggacgaagcgtgcca
acctccaacagtgcctacaccaccaatatgagcggtccaatgtatggggagtccgtgaac
cagttcgcgcagcaagcaaaaacgtatatcggggcgcccactccagtgtcggtgacaggg
aatgtgcagacctgcatgtcttgcgggtcaagtgggcacaacgcgcagaactgccctgca
ggcatgtacaggcagcagcctggtgtgaaaacggcaagctcctacggctcttcgcagcct
cgtaacgctggccccagaccgtgtttcaaatgcaatcagatcgggcactttgctagctct
tgcccactgctggcccctgccccccagcagcagcagtatcggagcggcggcgctttgtca
ggtggttatggtcagcagcagccctatcttggggctaccaactactga
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