Miscanthus floridulus: 136512335
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Entry
136512335 CDS
T10264
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
mflo Miscanthus floridulus
Pathway
mflo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136512335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136512335
04121 Ubiquitin system [BR:
mflo04121
]
136512335
03036 Chromosome and associated proteins [BR:
mflo03036
]
136512335
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136512335
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
136512335
Ubiquitin system [BR:
mflo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
136512335
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
136512335
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
136512335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
RTT107_BRCT_5
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-HC5HC2H_2
zf-RING_6
PHD_NSD
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
136512335
NCBI-ProteinID:
XP_066362398
LinkDB
All DBs
Position
16:98597662..98602536
Genome browser
AA seq
960 aa
AA seq
DB search
MADVGSLERMGRELKCPICLSLLTSAVSITCNHIFCNACLTESMKSASCCPLCKVPFSRR
EIRPAPHMDNLVSVLKSMEAAAGTSVVSTQLTPAPKVADCAGNSAGKPKKPNKKKPASKN
EKNTTKTAATSATAKSSISKNKRIHVTPFPESETPIRPKKVMKSDEQKSNLNGDVKEDKD
KSLNSDIPESPSLSPFFWLREQEENEGGTAETLSEPPSLDTPLRHNAPTFSDIKDSDDER
PNDMTPNSKAEVSEIFDSEIFEWSQRPCSPELRSTPLKSQGKSKNVLDQITEVDDGEDMN
LGGSFDKLDHESNVAQPLNAEEVKKKKLTRPRKRKNSKLPSCGKLCTRGSDAEHQVANIP
ESIVAKPRQKDGSKKERNTSNGGNKVSGNNATAVFSSEKSMNTFSPQAGGLGNEVPENQL
SERIPKKDKNSRSKLEIAGDSAVKTAENKSDQRGKRIRRISDGAVAEKIRILSEAENEIE
SFQLHSLTKGCTQHKPLDGRSKKNIVSNIGPNTPSILPRRCPLNEAIRTVPSVRNVSVKN
GSAKPIEQQDYSGTVRSCTARNAVLKKCEDKASKLYCAFCQSDDITEGSGEMVHYHNGKQ
VPASFDGGATVHCHKNCLEWAPDVYFEDDSVFNLTNELARSKRIKCACCGIKGAALGCFE
MSCRKSFHFTCAKLIPECRWDNENFVMLCPLHQSSKLPTETSGLKKKSHRKLTPKGPSQV
NTSQGHGNKWTWPSGSPQKWVLCCSALSATEKGIVSEFAKIAGVPISTSWSPNVTHVIAS
TNMSGACKRTMKFLMAILNGKWVISIDWVKTCMELMEPVDEMRFEISTDVHGTAEGPRLG
RLRVINKQPKLFDGIEFYLHGDYTKSYRGYLQDLVVAAGGTVLQRKPVSRNQQKLVDDSS
LILIVYSIENQDKAKPRSRDGINIKRSQVDAQALAYASGGKVVSSAWIIDSIAACNLQPL
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtggggagcctcgagaggatgggccgggagctcaagtgccccatctgcttg
agcctgctcacttcggcggtgtccatcacctgcaatcacatcttctgcaacgcctgcctg
acggagtcgatgaaatctgcctcctgctgccccttgtgcaaggtcccgttcagccggaga
gagatacggccagcacctcacatggacaatttggtgtctgttttaaaaagcatggaagct
gcagcgggcactagtgttgtgtcaacacagctgactccagcacccaaagttgcagattgt
gctgggaacagtgctgggaagcctaaaaagccgaataaaaagaagccagcatccaagaat
gaaaagaatacaaccaaaactgctgcaacatctgcaactgcaaagtcttcaatctccaag
aacaaaagaatacacgtgacaccattccctgaatctgagacgccgataaggcccaagaag
gttatgaagtctgatgagcaaaaaagtaatctgaatggtgatgttaaagaggataaagat
aaaagtctgaactctgatataccagaaagcccttcattgtcaccttttttctggctgagg
gaacaagaggaaaatgaaggtggcactgctgaaactttgagtgaaccaccatcattggac
acacccttgcgtcacaatgcgcctacctttagtgatatcaaagattctgatgatgaaagg
cctaatgatatgactcctaatagcaaagctgaggtttcagaaatatttgacagtgaaatc
tttgaatggagccaaagaccttgctcccctgagctgcgttctaccccactgaaaagtcag
ggtaagtcgaagaatgttctagatcaaatcacagaggtggatgatggtgaagatatgaat
cttggtggttcatttgataagttagaccatgaaagtaatgtagctcagcctctaaatgct
gaagaagttaagaagaaaaagttaacaagacctaggaaaagaaagaattcaaaattgccc
agttgtggcaaactatgtacaagaggatctgatgctgagcaccaagttgcaaatatccca
gaaagtattgttgcaaagccacggcaaaaggacggcagcaaaaaagagagaaatacttca
aatggaggaaacaaggtctctggcaacaatgctacagctgtcttttctagtgaaaaatct
atgaatacattttcccctcaagcaggtggtttgggcaatgaagtacctgagaaccagctt
tcagaaaggatccccaaaaaggataaaaacagtcgaagcaaacttgaaatagcaggggat
agtgcagtgaagactgcagagaataaatctgatcaaagagggaagcggatcagaagaatt
tctgatggtgctgtagctgaaaagataagaattctttcagaggctgaaaatgaaatagaa
tcgtttcagcttcacagcctcacaaaaggctgcacccaacataaacccttggatggtaga
agtaaaaaaaacatcgtatccaacattggtccaaatacaccaagcattttacctaggagg
tgcccattaaatgaggccatacgcacagttccttcagtaaggaatgtctctgttaagaat
ggtagtgcaaaacctattgaacaacaagattactcaggaactgtcagatcatgcactgca
cgcaatgctgtcctgaagaaatgcgaggataaagcttctaagctttactgtgctttctgc
cagtctgatgatatcacagagggatctggagagatggttcactaccataatggaaagcaa
gttcctgcatcatttgatggaggggctactgtacattgccacaaaaactgtctggagtgg
gctcctgatgtctactttgaagatgactctgtctttaatcttacaaatgagctggctaga
agtaaaagaatcaaatgtgcttgctgtggaattaaaggtgctgcacttggatgcttcgag
atgagttgtcgaaaaagcttccatttcacctgtgctaaattaatcccagaatgtagatgg
gataatgaaaactttgtgatgctatgccctttgcaccaatcttcaaagttgcctacagag
acttctgggttgaaaaagaagtcgcacaggaaactaacaccaaaagggccatctcaagta
aacactagtcaaggtcatggtaataaatggacatggccatctggatcaccacagaaatgg
gttctgtgctgttcagccctttctgctacagaaaagggtattgtctcagaattcgcaaaa
atagctggtgtgcctatctcaacaagttggagtcctaatgttacccatgttattgcatca
accaacatgtctggtgcttgcaagcgcacaatgaagtttctgatggcaatcttgaatggc
aaatgggttatctccatcgactgggttaagacatgcatggaacttatggaacctgttgat
gaaatgagatttgaaatttccactgatgtacatggcactgctgagggtcccaggttaggc
agactacgagttatcaataagcaacctaaattattcgacggtattgagttctatctccat
ggagattacaccaagtcctacaggggctacctgcaagaccttgtggttgcagccggtgga
actgtcctgcaaaggaagcctgtgtcaagaaatcagcagaagttggtcgacgacagctcc
ctcatcctcatcgtctacagcattgagaatcaagacaaggcaaaaccaagatcaagggat
ggcataaatattaaacgtagccaagttgatgctcaggctctggcctatgcctctggtggc
aaagttgtgagcagcgcatggatcattgactccatagcagcttgcaaccttcaacctctt
taa
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