Miscanthus floridulus: 136513376
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Entry
136513376 CDS
T10264
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
136513376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136513376
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136513376
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
136513376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6742
Motif
Other DBs
NCBI-GeneID:
136513376
NCBI-ProteinID:
XP_066363478
LinkDB
All DBs
Position
16:107219379..107249902
Genome browser
AA seq
1784 aa
AA seq
DB search
MADGQPIQGRPSAGGSHMSGVWGREKPRQASPPRKIYGEAASNLRPGDSAASEEVDSIHF
SFYSDDEIKRFSIKKITKSERLDAKNLPVPGGLLDPAMGPINDTDTCKSCGQHSVRCPGH
FGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNKEQVDRYVNELELLVKGDIVRAKN
LEDSVKEAYLSEEDEGITKTASGDKSSPVNDKKTWTSIQLKEVLSIFSKIMKKRQKKCAK
CDMKSPTISSPIFGWLVKDTSASAVRANAMAGFKLKGDGDAHNSGETGVSGLDKEPTSPG
MVSKGSINEVRRLSDDTIKEMVASSGKKHLLPTEVESILKDLWKNEARFCMLLCDFQKNT
LSEPEKRRGYEMFFLNSLLVAPNRFRPSTSSSLGIMEHPQSVLLSKVQEANLALHHNNAC
SNHMDVLRRWMDLQRNVNVLYDSSRGLVRSEKNAHGIRQLLEKKEGILRQKMMGKRVNYA
CRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNTKKLQEAIRNGADIHPGATHYRDN
NSMYKLQAVPAKRRSIAKMLPASRGSICQPGRDPNCEFESKVVYRHLQDGDIVLVNRQPT
LHKPSMMAHFVRVLPGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDAN
KQYIGPRSGDAVRGLIQDHIVGAVLLTKPDTFLSREEYSQLVFGSCVPSSNRGARHPGKK
VSAIEDYGTLELVHPAIWKPKPLWTGKQVITTILNHLTKGRPPFTVEQKGKIPKEYLKEQ
DPSAQKEKEGPPAQKGKEYPPAQKEKEDPSTQKEKEDSSARKEDRSAQKEKQEDPSAQEE
TQEDPSAQKEKDPSTQKEKEDPSVKKEKEKQKRIQKLKQKQKQDDRSELVLYIHDNELIK
GIVDKAQFGKYGIVHTVHELYGADTAGILLSTFSRLFTLFLQSHGFTCGIDDLLLLQKAD
KLRSDILSGSEKCSEEVHLKFTGAGEDLKGDLVKLHMEVEKAVRSNGESDTATLDNLMKN
ALSAITTEVNKKLFPDGLQKPFPGNCLSLMTTTGAKGGPVNMNQISSLLGQQELEGKRVP
RMVSGKTLPCFPPWDISSRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY
LQRCLIKCLESLKVSYDHTVRDVDGSIVQFQYGEDAVDVLKTSFLNEFKELADNRKAVLA
KLGGHSMKPTYNEYIDELPVKLNDKAEEFLKRSKEFQRCRYNIEAEELKELLKVKFLSSL
VDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGDLNVTLGIPRLKEILMTASANIRTPVM
KCPLLEHISMDDAKMVAAKLTRVCVADIVEKIEVCTVPFYNYNGHVSTLYKLQVKLYPED
QLESGLTVDECQTTLRTVFVDAMEHAIEKHLDLLHKINEIRAVKVKDTEGSLSDGGEESE
SRHADGGDTGTSDDDDQNDNDDDLGTDAEKMKRQEKDEMEYDDDTENEEGMGSESEESDE
DPAESGDESQEADKEHEISKSKMTSVDDLSYSAKKGKKSKDNHGTAKLEEKNQNEGRLND
QKQDQITKRRKKLKRTIHVESNDLDFEIHYAFHDEPHILLAQIAKKIARTIFVKACNNIV
RCKIVKPKDDHARIETAGVNFEVIWNLNEYISMRDITSNDIHAILKTYGVEAARKTIIDE
VSGVFKPYGIDVDMRHLSMIADFMTLDGGYRPMNRMGIGQFSTSPFGKMTFETATKFIVE
AATHGEADFLVCPSASVCLGKPPKVGTGIFGLLQNLELEQPMET
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgggcagcctattcagggcagacccagtgccggaggctctcacatgagtggg
gtctggggaagggaaaaaccgaggcaagcttcccccccccgcaaaatctacggagaggct
gcttcgaacctgcgacctggtgactcagcggcatcagaggaagtggattcaatccacttc
agcttctatagtgatgatgagattaagaggttcagtattaaaaagatcaccaagtcggag
cgccttgatgccaaaaaccttcctgtgccaggtggattactggaccctgcaatgggacct
atcaatgatactgatacctgcaagagttgtggtcagcattctgttcgttgccctggtcac
tttggtcatattgagttggcaaaaccattgttcaatcctttgctgtttatgagtctgaaa
aaccttctccatgtcacatgcttccattgtcacaagttccgcttgaacaaggaacaggtt
gacagatatgtgaatgaacttgaacttttagtaaagggtgatattgtccgtgctaaaaat
ttggaagactcagttaaagaagcatatctttctgaggaagatgaaggcattaccaagacc
gcttcaggcgataaatcatctcctgtgaatgacaagaaaacctggacatcgatccaatta
aaagaggttttgtctattttttccaagataatgaaaaagagacagaagaagtgtgcaaaa
tgtgacatgaagagcccaacaatctcaagtcctatatttggttggctggtcaaggacaca
agcgcttctgctgtaagagcaaatgcaatggctggttttaaactcaagggagatggtgat
gctcacaactcaggggaaacgggggtttctggtcttgacaaagagccaacttcacctgga
atggtgtccaaaggatcaatcaatgaagttagacgcctttctgatgatacaattaaagag
atggtagcatcatcaggaaagaagcatctattgcctacagaggttgaatctattctcaag
gacttgtggaaaaatgaagctaggttctgcatgttactttgtgacttccagaagaatacg
ttaagtgaaccagaaaagagaaggggctatgaaatgtttttcttgaatagtctccttgtg
gcaccaaatagattccgcccatcaactagctctagtcttggaattatggaacatcctcaa
agtgttctgctaagtaaagtgcaagaagccaatcttgcgctacaccataacaatgcatgt
tctaaccatatggatgttcttcgaagatggatggatctacaacggaatgtaaatgtgtta
tatgatagtagcagaggccttgtaagaagcgagaagaatgctcatggtatacgacaacta
ttggaaaagaaagaaggaattcttcgacagaagatgatggggaagagggttaattatgca
tgccgatctgttatatctccagatccgtacttggctgttaatgaaattggcattcctcct
gtttttgcgacacggttgacatatcctgagaaagtaacaccctggaataccaaaaaactc
caagaagctataaggaatggtgctgatatccatccaggtgcaacacattacagggacaac
aatagcatgtataagttacaggcagtccctgccaaacgccgttccattgctaagatgcta
cctgcatccagaggatcgatttgtcagccagggagagatcctaattgtgaatttgaaagc
aaggttgtatatcggcatcttcaagatggtgacattgtacttgtcaataggcagcctact
cttcacaagcccagcatgatggctcattttgttcgtgtgttacctggagaaaagacgtta
cgaatgcactatgccaattgcagcacctacaatgctgattttgacggagatgagatgaat
gtgcactttccacaagatgaaatatcccgtgctgaggccatgaatattgttgatgcaaac
aagcaatacattggtcctaggagtggggatgctgtcagaggtctcatacaggaccacatt
gttggtgctgtactactgacaaaaccagacacatttctaagccgtgaagaatatagtcag
cttgtctttgggtcttgtgtgccatcctcaaatcgtggcgctcgtcaccctggtaaaaag
gtgtctgctattgaggattatggtacactcgaacttgtccatcctgctatttggaagcca
aagcccttatggacaggaaaacaggttataacaacaatcttgaatcatttaacaaaaggt
cgtcctccatttactgtggagcagaagggaaaaataccaaaagaatatctaaaagaacaa
gatccttctgctcaaaaagaaaaagaaggtcctcctgctcaaaaaggaaaagaatatcct
cctgctcaaaaagaaaaagaagatccttccactcaaaaagaaaaagaagattcttcggct
cgaaaagaagatcgttctgctcaaaaagaaaaacaagaagatccttctgctcaagaagaa
acacaagaagatccttctgctcaaaaagaaaaagatccttccactcaaaaagaaaaagaa
gatccttcagttaaaaaagaaaaagaaaagcaaaagagaatacagaaactaaaacagaag
caaaagcaagatgatcgttctgaactggtcttatatattcatgataatgagctcataaag
ggcatagtagataaggcccagtttgggaagtatgggatagttcatacagttcatgaactc
tatggtgcggatacagctgggatactgctctcgacattcagccgcttatttacacttttc
ttgcagtcgcatgggtttacttgtgggatagatgacctgctactattgcaaaaggcggat
aaactgagaagtgacattcttagtggaagcgaaaagtgtagcgaagaagtccacctgaaa
tttactggagctggagaggatcttaaaggtgatctggtaaaattgcatatggaggtggag
aaggctgtaagaagtaatggtgaatcggacacggctaccttggacaatcttatgaaaaat
gctctcagtgcaataacaaccgaagtcaataaaaaattatttcctgatggtctacaaaag
ccctttcctggaaattgtctctctcttatgactacaactggagccaaaggtggcccggtt
aacatgaatcaaatatcatcattgctaggccagcaagagttagaaggaaagcgtgttcca
cggatggtttctgggaagactttaccgtgctttccgccgtgggatatttcttcaagagct
ggtggtttcatcagtgatcgatttttaactggtctgcgccctcaagagtattactttcac
tgtatggcaggcagagaggggttggttgacacagcagtcaaaacatcccgtagtggatac
cttcagcgttgtcttataaaatgtttggaatcgttgaaagtctcctatgatcacacagtt
cgggatgtcgatggatcaattgtacagttccaatatggagaagatgcagttgatgttctg
aaaactagctttctcaacgagttcaaagaacttgctgataacagaaaagctgtccttgcc
aagctcggtggccacagtatgaagcccacatataatgaatacattgatgaactgccagtt
aaattgaatgataaagcggaagagtttcttaagcgttcaaaggaatttcaacgctgtcgt
tacaacattgaggcagaggaattaaaggagttactgaaagtcaagttcctatctagtctt
gtagaccctggtgaggctgttggtgtggttgctgctcagtcaataggagaaccttctacg
cagatgacgctcaacacttttcatcttgctggaaggggtgacttgaatgtaactcttggt
atacctcggttgaaagaaatactgatgactgcatcagctaatattaggacgcctgttatg
aagtgtcctttgcttgaacatatttctatggatgatgctaaaatggtggctgcaaagctt
acgagggtttgtgtcgctgatatagtggagaaaattgaagtgtgcacagttcctttttac
aactataatggacatgtttcaaccctatacaagttacaggtgaaactctatccagaagac
cagcttgagtcaggccttactgtagatgagtgtcagacgaccttgagaacagtttttgtt
gacgcaatggaacatgcaattgaaaagcatttagatctgctacacaaaataaatgagatc
cgtgctgttaaggtaaaagatacagagggctcattatcagatggtggtgaagaatctgaa
agtagacatgctgatggaggagacactggtacaagtgatgatgatgatcaaaatgataat
gatgatgacttgggaactgatgcagaaaagatgaaacggcaagagaaagatgagatggag
tatgatgatgatactgaaaacgaggagggaatgggtagcgaatccgaggagagcgatgag
gatccagctgagtcaggtgatgagtcacaagaggctgacaaagaacacgaaatctcaaag
tctaagatgacttcagtggatgacctgtcatattctgctaaaaaggggaaaaaatcaaaa
gataatcatggaacagctaaactagaagagaaaaatcaaaatgagggaagattaaatgac
cagaaacaggatcaaataacgaagcgcaggaaaaagctaaaacgtactatccatgttgaa
tccaatgatttggattttgagattcactatgcctttcatgatgaacctcatattttacta
gctcagattgccaagaagatagctaggactatttttgtgaaggcctgcaataacattgtt
cgttgtaagattgtcaagccaaaggatgaccatgcccgtatagagacggccggagtgaac
tttgaagtgatctggaacctcaacgaatacatcagcatgcgtgacatcacgtcaaatgac
atccatgcgatactgaagacatatggggtggaggccgcacggaaaaccatcatcgatgaa
gtgagcggcgtgtttaaaccctacggcatcgatgttgacatgaggcacctgagcatgatc
gcggacttcatgaccttggatggcggataccggcctatgaacaggatggggattggccag
ttcagcacctcgccgtttggcaagatgacattcgagacagcaaccaagttcattgtggag
gcagccacacatggggaggcagactttctggtgtgcccctcagcgagtgtctgcctcggt
aagcccccaaaggttgggaccgggatctttgggctactgcagaatcttgaattggagcag
cccatggaaacctaa
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integrated database retrieval system
